ClinicalTrials.gg
RecruitingNCT05689255Updated Apr 9, 2026

Gut Microbiome and Metabolome in Patients With Gallstone Disease After Surgical and Endoscopic Interventions

An observational study in Gallstone Disease and Bile Duct Diseases, sponsored by Changi General Hospital. Recruiting at 1 site in Singapore. Open to participants aged 21 Years to 80 Years. Per ClinicalTrials.gov, last updated 2026-04-09.

Sponsored by Changi General Hospital · Observational

From the registry’s dates

  • Started Dec 2022; still recruiting 3 years 10 months later.
Study type
Observational
Model
Cohort
Time perspective
Prospective
Enrollment
65
Ages
21 Years to 80 Years
Sex
All
01

Study summary

The goal of this longitudinal observational cohort study is to examine the changes in the composition and diversity of gut microbiome and systemic metabolome in patients with symptomatic gallbladder stones with or without concomitant common bile duct (CBD) stones who will be undergoing cholecystectomy with or without prior endoscopic sphincterotomy (ERCP-ES) and CBD stones extraction. The main questions it aims to answer are whether there are:

  • differences in gut microbiome diversity and composition before and after cholecystectomy
  • differences in systemic metabolome before and after cholecystectomy
  • gut microbiome and systemic metabolome changes after cholecystectomy

Participants will be asked to provide stool, urine, plasma and saliva samples prior to and 1-6 months after cholecystectomy. For patients with concomitant CBD stones who undergo ERCP-ES before cholecystectomy, bile specimens will be collected from the bile duct during ERCP-ES as well as the gallbladder and/or during cholecystectomy.

Read the detailed description

This is a longitudinal observational cohort study that will examine the changes in the composition and diversity of gut microbiome and systemic metabolome in patients with symptomatic gallbladder stones with or without concomitant CBD stones who will be undergoing cholecystectomy with or without prior ERCP-ES and CBD stones extraction.

Patients with symptomatic gallstones with or without CBD stones being planned for cholecystectomy will be recruited from both inpatient and outpatient settings. Upon enrolment, baseline clinical characteristics will be recorded, and biospecimens (stool, urine, plasma and saliva) will be collected prior to cholecystectomy for subsequent gut microbiome and systemic metabolome analysis. For patients with concomitant CBD stones who undergo ERCP-ES before cholecystectomy, bile specimens will be collected from the bile duct during ERCP-ES as well as the gallbladder during cholecystectomy, for subsequent bile microbiome analysis. After cholecystectomy, during the scheduled clinic review at 1 to 6 months post-surgery, patients will be reviewed for symptoms of post cholecystectomy syndrome (PCS) or post cholecystectomy diarrhoea (PCD), and biospecimens (stool, urine, plasma and saliva) will again be collected for subsequent gut microbiome and systemic metabolome analysis. The microbiome profile of the study cohort will be compared at baseline with matched controls from other defined cohorts. Post cholecystectomy, the study cohort will also be compared with matched cohort with cholecystectomy duration of more than 12 months.

02

Conditions studied

  • Gallstone Disease
  • Bile Duct Diseases

Keywords

  • microbiome
  • metabolome
03

In context

Cholelithiasis

189 studies on the registry are indexed under Cholelithiasis; 42 are open to participants now.

This study's planned enrollment of 65 is below the median of 197 across 50 observational studies indexed under Cholelithiasis.

Browse Cholelithiasis studies →

Lead sponsor

Changi General Hospital is the lead sponsor of 101 studies on the registry; 18 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
21 Years to 80 Years
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Non-probability sample

Study population

This single centre study at Changi General Hospital will enrol up to 65 patients aged 21 to 80 years with symptomatic gallstone disease and/ or bile duct stones who will be undergoing cholecystectomy with or without concomitant ERCP-ES as part of standard clinical treatment. There will not be stratification by demographics.

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Aged 21 years to 80 years
  • Diagnosis of symptomatic gallstone disease without or with concomitant bile duct stones based on prior diagnostic radiological imaging such as transabdominal ultrasound (US), computed tomography (CT), magnetic resonance imaging (MRI) or endoscopic ultrasound (EUS).
  • Will be scheduled for cholecystectomy with or without concomitant ERCP-ES for treatment.
  • Patient is willing to provide before enrolment in the study.

Exclusion criteria

Exclusion Criteria:

  • Subjects undergoing ERCP-ES with no intention for future cholecystectomy
  • Use of antibiotics or probiotics within 1 month (exception: use of antibiotics within 48 hours of cholecystectomy or ERCP, as metagenomics will be able to sequence both dead and live bacteria, and marked compositional change is not expected within this time frame)
  • Presence of diagnosed within the last 1 year
  • Previous gastrectomy, appendicectomy, small bowel or large bowel surgery
  • Inflammatory bowel disease
  • Active gastrointestinal tract infections
Terms in these criteria, in plain language(2)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

Cancer (malignancy)

Malignancy means cancer. Criteria about another or earlier malignancy ask whether you have had a different cancer, usually within a set number of years.

Some are commonly allowed, such as treated skin cancers other than melanoma and early cancers removed completely — check the exceptions this study lists.

05

Study design

Observational model
Cohort
Time perspective
Prospective
Enrollment
65 participants (estimated)
Patient registry
No
Biospecimen retention
Samples with dna
06

What researchers measure

Primary outcomes

  1. Gut microbiome profile using metagenomic shotgun sequencing

    Fresh stool samples will be collected for microbial DNA extraction prior to and 1-6 months after cholecystectomy. Microbial DNA will be extracted from the stool samples and used for metagenomic shotgun sequencing.

    Time frame: 1-6 months

  2. Systemic metabolome profile using targeted and untargeted metabolomic analysis

    Urine, plasma and saliva samples will be collected for metabolomic profiling prior to and 1-6 months after cholecystectomy.

    Time frame: 1-6 months

Secondary outcomes

  1. Bile microbiome profile using metagenomic shotgun sequencing

    Bile samples will be collected for microbial DNA extraction ERCP and endoscopic sphincterotomy

    Time frame: 1-6 months

07

Study locations

1 of 1 sites recruiting
  • Changi General Hospital
    Singapore, Singapore 529889, Singapore
    Recruiting
    • Siok Luan Ong · Contactong.siok.luan@singhealth.com.sg · +65-64267280
    • Andrew Siang Yih Wong · Sub investigator
    • Andrew Boon Eu Kwek · Sub investigator
    • Adrian Kah Heng Chow · Sub investigator
    • Nita Thiruchelvam · Sub investigator
    • Jinlin Lin · Sub investigator
    • Annalisa Ya-Lyn Ng · Sub investigator
    • James Weiquan Li · Sub investigator
    • Daphne Shih Wen Ang · Sub investigator
    • Yu Jun Wong · Sub investigator
    • Chin Kimg Tan · Sub investigator
    • Kenneth Weicong Lin · Sub investigator
    • Nicholas Tee · Sub investigator
    • Amanda Huimin See · Sub investigator
    • Seok Hwee Koo · Sub investigator
08

References and documents

Publications

  • Reid FD, Mercer PM, harrison M, Bates T. Cholecystectomy as a risk factor for colorectal cancer: a meta-analysis. Scand J Gastroenterol. 1996 Feb;31(2):160-9. doi: 10.3109/00365529609031981. PubMed 8658039 ↗
  • Di Ciaula A, Garruti G, Wang DQ, Portincasa P. Cholecystectomy and risk of metabolic syndrome. Eur J Intern Med. 2018 Jul;53:3-11. doi: 10.1016/j.ejim.2018.04.019. Epub 2018 Apr 26. PubMed 29706426 ↗
  • Chen Y, Wu S, Tian Y. Cholecystectomy as a risk factor of metabolic syndrome: from epidemiologic clues to biochemical mechanisms. Lab Invest. 2018 Jan;98(1):7-14. doi: 10.1038/labinvest.2017.95. Epub 2017 Sep 11. PubMed 28892095 ↗
  • Latenstein CSS, Alferink LJM, Darwish Murad S, Drenth JPH, van Laarhoven CJHM, de Reuver PR. The Association Between Cholecystectomy, Metabolic Syndrome, and Nonalcoholic Fatty Liver Disease: A Population-Based Study. Clin Transl Gastroenterol. 2020 Apr;11(4):e00170. doi: 10.14309/ctg.0000000000000170. PubMed 32352682 ↗

Individual participant data

Plan to share: No

09

Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reachedSimilar studies: half by the dot; the band is the middle halfHalf of similar studies reached it by the dot; the band is the middle half, from a quarter to three quarters

Started Dec 2022 (actual). Primary completion is estimated for Dec 2026, 48 months after the start.

Of 20 observational studies under Cholelithiasis, half reached primary completion within 33 months of starting (the median), counting those still running; a quarter within 18 and three quarters within 191. This study's planned 48 months is above that.

How these figures are worked out, and which studies are left out of them.

Registered
Nov 28, 2022
First posted
Jan 19, 2023
StartActual
Dec 23, 2022
Primary completionEst.
Dec 31, 2026
CompletionEst.
Dec 31, 2026
Last update
Apr 9, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Apr 9, 2026, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT05689255
Responsible party
Ang Tiing Leong (Senior Consultant, Department of Gastroenterology and Hepatology, Changi General Hospital) — Principal investigator
First posted
Jan 19, 2023
Start date
Dec 23, 2022
Primary completion
Dec 31, 2026 (estimated)
Completion
Dec 31, 2026 (estimated)
Last update
Apr 9, 2026

Study contacts

Seok Hwee Koo
Contact
seok_hwee_koo@cgh.com.sg
+6568504929
Nway Nway Aye
Contact
nway_nway_aye@cgh.com.sg
+6569365737
Tiing Leong Ang
principal investigator · Changi General Hospital

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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