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Not yet recruitingNCT07740499TOL-IBDUpdated Jul 31, 2026

TOLerogenic Potential of Hematopoietic Stem and Progenitor Cells and Inflammatory Bowel Disease

An observational study in Inflammatory Bowel Disease (Crohn's Disease; Ulcerative Colitis), sponsored by IRCCS San Raffaele. Not yet recruiting at 2 sites in Italy. Open to participants aged 2 Years to 18 Years, including healthy volunteers. Per ClinicalTrials.gov, last updated 2026-07-31.

Sponsored by IRCCS San Raffaele · Observational

Study type
Observational
Model
Case-control
Time perspective
Prospective
Enrollment
80
Ages
2 Years to 18 Years
Sex
All
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Study summary

Pediatric refractory Inflammatory Bowel Disease (IBD) is a chronic inflammatory condition of the gastrointestinal tract, not responsive to current treatments. Since hematopoietic stem and progenitor cells (HSPCs) in the bone marrow display immunomodulatory functions and IL-10-producing regulatory cells regulate gut homeostasis, by combining state-of-the-art strategies for the ex-vivo manipulation and expansion of HSPCs and gene delivery systems to drive HLA-class II-restricted antigen presentation and expression of tolerogenic molecules, the investigators propose to dissect the antigen- (Ag-) presenting capacity of HSPCs and to exploit their tolerogenic potential to induce IL-10-mediated tolerance in the intestinal mucosa of IBD patients. The investigators hypothesize that HSPCs can be engineered using commensal-derived Ags w/wo IL-10 to drive the differentiation of Tr1 cells with the desired Ag-specificity to control intestinal inflammation in IBD. The results of this study will pave the way for defining innovative cell-based approaches for treating refractory pediatric IBD.

Read the detailed description

Inflammatory Bowel Disease (IBD) is a chronic inflammatory condition affecting the gastrointestinal tract, with Crohn's Disease (CD) and Ulcerative Colitis (UC) being the main types. The causes of IBD are complex and include immune dysregulation with activation of immune cells, release of inflammatory cytokines, and intestinal tissue damage. Despite significant advances in the treatment of pediatric IBD, a large unmet need for a definitive cure remains, and cell immunotherapy is under investigation. The investigators are specifically interested in refractory IBD, a chronic active condition requiring continuous treatment for symptom relief, with detrimental side effects. Despite the several treatment options currently available, 30% of pediatric IBD patients are refractory, and none of the existing treatments results in complete remission.

Interleukin 10 (IL-10) is an immunoregulatory cytokine associated with IBD pathogenesis and regulating gut homeostasis. Type 1 regulatory T (Tr1) cells produce IL-10 and their function is crucial for suppression of inflammation in IBD. The investigators recently published that antigen (Ag)-specific immune responses in Celiac Disease can be controlled via IL-10-producing Ag-presenting cells engineered to express a gliadin epitope, demonstrating that Ag-presenting cells can be manipulated to promote Tr1 cell differentiation.

Significant advances in the field of hematopoietic stem and progenitor cells (HSPCs) engineering and biology have been achieved. The development of protocols for ex-vivo manipulation and expansion of circulating (c)HSPCs and of mobilization-based chemotherapy-free approaches broadens the applicability of HSPC-based therapies to diseases for which HSPC transplantation is not the standard of care. A recent report showed that Tr1 cells can be promoted by immunogenic HSPC, which present Ags via HLA class II to CD4+ T cells in the bone marrow. This discovery opens new avenues for the development of approaches exploiting the Ag-presenting capacity and the tolerogenic potential of HSPCs to counteract inflammation in target tissues.

Based on these premises, with the final goal of developing a procedure for the induction of IL-10-mediated tolerance to control intestinal inflammation in refractory IBD pediatric patients, the investigators will:

  • Investigate the type and frequency of inflammatory and regulatory immune cells, including IL-10-related regulatory cells, infiltrating the gut mucosa of IBD and non-IBD control patients. Results will indicate whether enforcement of the regulatory arm would benefit IBD patients. To this aim, it is necessary to collect and analyze intestinal tissue fragments from IBD and non-IBD control patients.
  • Investigate the type and frequency of immune cells, including IL-10-related regulatory cells, circulating in the peripheral blood of IBD patients and non-IBD control patients. Results will indicate whether enforcement of the regulatory arm would benefit IBD patients. To this aim it is necessary to collect PB from IBD and non-IBD control patients.
  • Characterize the presence, phenotype, and expansion potential of CD34+ HSPCs circulating in the peripheral blood of IBD patients. To this end, the investigators will collect peripheral blood from IBD patients, and i) assess the frequency, composition, and Ag-presenting potential of and ii) apply ex-vivo expansion and engineering protocols to CD34+ HSPC circulating in the peripheral blood of IBD patients. These results will be pivotal for assessing the feasibility of HSPC-based approaches to restore homeostasis in the intestinal tissue in refractory pediatric IBD.
  • Evaluate the response to commensal-derived Ags (e.g., Bacteroides-derived peptides) of CD4+ T lymphocytes circulating by collecting the peripheral blood of IBD patients, non-IBD control patients, and healthy subjects as control. These results will indicate which Ag could be used for HSPC engineering and for inducing IL-10-producing regulatory T cells.
  • Assess the ability of human HSPCs to promote Ag-specific Tr1 cells in vitro. To this end, selected IBD patients known to be responders commensal -derived Ags (as above) and peripheral blood will be collected at 1 year (6-18 months) follow-up. The investigators will engineer circulating HSPCs ex-vivo expanded from the peripheral blood of selected IBD patients and test for their ability to promote Ag-specific Tr1 cell upon in vitro culture with autologous CD4+ T cells.
02

Conditions studied

  • Inflammatory Bowel Disease (Crohn's Disease; Ulcerative Colitis)

Keywords

  • hematopoietic stem and progenitor cells (HSPCs)
  • immune tolerance
  • regulatory T cells
  • IL-10 producing cells
  • commensal-derived epitopes
03

In context

Inflammatory Bowel Diseases

1,460 studies on the registry are indexed under Inflammatory Bowel Diseases; 437 are open to participants now.

This study's planned enrollment of 80 is below the median of 139 across 645 observational studies indexed under Inflammatory Bowel Diseases.

Browse Inflammatory Bowel Diseases studies →

Lead sponsor

IRCCS San Raffaele is the lead sponsor of 443 studies on the registry; 234 are open to participants now.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
2 Years to 18 Years
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

Eligible participants will be consecutively enrolled as they present to the clinical centers until the planned sample size is achieved.

The Study will include pediatric subjects, both males and females belonging to the following study populations:

  1. IBD patients: pediatric patients with chronic intestinal inflammation (i.e., inflammatory bowel disease (IBD), including Crohn Disease, Ulcerative Colitis) at diagnosis or follow-up (including responders to standard of care and refractory to treatment);
  2. Non-IBD patients: patients with rectal bleeding with a negative colonoscopy and the exclusion of any inflammatory disorders of the gastrointestinal tract;
  3. Healthy controls: healthy volunteers participating in the TIGET09 study protocol ("Collection of biological samples for the study of blood cells and their microenvironment, and for the development of novel therapeutic approaches for genetic diseases and cancer."), as control population.

Inclusion criteria

For all groups:

  • Written informed consent from parent(s)/legal guardian(s);
  • Sex: Males and Females;
  • Age: ≥2 years and \<18 years.

For study group 1:

- Subjects with suspected or confirmed IBD diagnosis.

For study group 2:

- Subjects with rectal bleeding w/o inflammatory disorders of the gastrointestinal tract.

For study group 3:

  • Written consent for participation to TIGET09 study protocol;
  • healthy subjects, without known immunodeficiencies, autoimmune, inflammatory or genetic diseases, undergoing genetic, hematological, hematochemical, or HLA compatibility screenings and participating in the TIGET09 study protocol (Title: "Collection of biological samples for the study of blood cells and their microenvironment, and for the development of novel therapeutic approaches for genetic diseases and cancer").

Exclusion criteria

Exclusion Criteria:

For all groups:

  • Refusal or inability of the parent(s) or legal guardian(s) to provide written informed consent;
  • Age: \<2 years and ≥18 years;
  • Presence of any medical, psychiatric, or clinical condition that, in the opinion of the clinician, may interfere with participation in the study or interpretation of the study results;

For study group 1:

- patients without IBD diagnosis or suspect;

For study group 2:

- Subjects without rectal bleeding or with known inflammatory/autoimmune disorders of the gastrointestinal tract.

For all groups:

  • Refusal or inability of the parent(s) or legal guardian(s) to provide written informed consent;
  • Age: \<2 years and ≥18 years;
  • Presence of any medical, psychiatric, or clinical condition that, in the opinion of the clinician, may interfere with participation in the study or interpretation of the study results;

For study group 1:

- patients without IBD diagnosis or suspect;

For study group 2:

- Subjects without rectal bleeding or with known inflammatory/autoimmune disorders of the gastrointestinal tract.

For study group 3:

  • Lack of written consent for participation to TIGET09 study protocol;
  • patients belonging to study groups 1 and 2; patients with immunodeficiencies, autoimmune, inflammatory or genetic diseases;
  • subjects with signs of systemic inflammation.
05

Study design

Observational model
Case-control
Time perspective
Prospective
Enrollment
80 participants (estimated)
Patient registry
No

Groups and cohorts

  • Study Group 1

    IBD patients: pediatric patients with chronic intestinal inflammation (i.e., inflammatory bowel disease (IBD), including Crohn Disease, Ulcerative Colitis) at diagnosis or follow-up (including responders to standard of care and refractory to treatment)

    Procedure: biological sample collection: an additional volume of peripheral blood (3-10 ml) · Procedure: biological sample collection: small fragment (1-5 mm) of intestinal tissue - residual or leftover material

  • Study Group 2

    Non-IBD patients: patients with rectal bleeding with a negative colonoscopy and the exclusion of any inflammatory disorders of the gastrointestinal tract

    Procedure: biological sample collection: an additional volume of peripheral blood (3-10 ml) · Procedure: biological sample collection: small fragment (1-5 mm) of intestinal tissue - residual or leftover material

  • Study Group 3

    Healthy volunteers (controls)

    Procedure: biological sample collection: leftover peripheral blood samples from healthy subjects

Interventions

  • Procedurebiological sample collection: an additional volume of peripheral blood (3-10 ml)

    An additional volume of peripheral blood (3-10 ml) will be obtained in concomitance with clinically indicated procedures

  • Procedurebiological sample collection: small fragment (1-5 mm) of intestinal tissue - residual or leftover material

    A small fragment (1-5 mm) of intestinal tissue - residual or leftover material -will be obtained from patients undergoing diagnostic or follow-up endoscopy

  • Procedurebiological sample collection: leftover peripheral blood samples from healthy subjects

    Peripheral blood samples from healthy subjects, leftover from TIGET09 protocol analysis will be collected

06

What researchers measure

Primary outcomes

  1. To characterize pediatric IBD patients' peripheral blood and intestinal mucosa immune cell composition

    Frequency (%) of predefined regulatory and inflammatory immune-cell subsets in peripheral blood and gut mucosa, including regulatory T cells (FOXP3+ Tregs and IL-10 producing Tr1 cells), T naïve/memory and effector cells, regulatory myeloid cells (DC-10), and inflammatory myeloid cells (cDC1 and cDC2), measured by flow cytometry. The primary objective will be considered met if patients with IBD show a lower frequency of IL-10-producing cells than controls, with the estimated between-group difference supporting a defect in IL-10-producing cell responses.

    Time frame: Baseline timepoint

Secondary outcomes

  1. To explore the ability of HSPCs to induce in vitro the differentiation of Ag-specific Tr1 cells.

    Induction of Tr1-like cells following T-cell/HSPC co-culture, assessed by: frequency (%) of cells expressing the Tr1-associated phenotype and expression of Tr1-associated genes. Success criterion (exploratory): Generation of a T-cell population displaying Tr1-associated features.

    Time frame: Baseline and 1 year follow up

07

Study locations

2 sites
  • Pediatric Immunohematology Unit, IRCCS Ospedale San Raffaele
    Milan, 20132, Italy
  • UOC Pediatria, Azienda Ospedaliero-Universitaria Sant'Andrea
    Rome, 00189, Italy
08

References and documents

Publications

  • Hernandez-Malmierca P, Vonficht D, Schnell A, Uckelmann HJ, Bollhagen A, Mahmoud MAA, Landua SL, van der Salm E, Trautmann CL, Raffel S, Grunschlager F, Lutz R, Ghosh M, Renders S, Correia N, Donato E, Dixon KO, Hirche C, Andresen C, Robens C, Werner PS, Boch T, Eisel D, Osen W, Pilz F, Przybylla A, Klein C, Buchholz F, Milsom MD, Essers MAG, Eichmuller SB, Hofmann WK, Nowak D, Hubschmann D, Hundemer M, Thiede C, Bullinger L, Muller-Tidow C, Armstrong SA, Trumpp A, Kuchroo VK, Haas S. Antigen presentation safeguards the integrity of the hematopoietic stem cell pool. Cell Stem Cell. 2022 May 5;29(5):760-775.e10. doi: 10.1016/j.stem.2022.04.007. PubMed 35523139 ↗
  • Omer-Javed A, Pedrazzani G, Albano L, Ghaus S, Latroche C, Manzi M, Ferrari S, Fiumara M, Jacob A, Vavassori V, Nonis A, Canarutto D, Naldini L. Mobilization-based chemotherapy-free engraftment of gene-edited human hematopoietic stem cells. Cell. 2022 Jun 23;185(13):2248-2264.e21. doi: 10.1016/j.cell.2022.04.039. Epub 2022 May 25. PubMed 35617958 ↗
  • Capo V, Penna S, Merelli I, Barcella M, Scala S, Basso-Ricci L, Draghici E, Palagano E, Zonari E, Desantis G, Uva P, Cusano R, Sergi Sergi L, Crisafulli L, Moshous D, Stepensky P, Drabko K, Kaya Z, Unal E, Gezdirici A, Menna G, Serafini M, Aiuti A, Locatelli SL, Carlo-Stella C, Schulz AS, Ficara F, Sobacchi C, Gentner B, Villa A. Expanded circulating hematopoietic stem/progenitor cells as novel cell source for the treatment of TCIRG1 osteopetrosis. Haematologica. 2021 Jan 1;106(1):74-86. doi: 10.3324/haematol.2019.238261. PubMed 31949009 ↗
  • Passeri L, Andolfi G, Bassi V, Russo F, Giacomini G, Laudisa C, Marrocco I, Cesana L, Di Stefano M, Fanti L, Sgaramella P, Vitale S, Ziparo C, Auricchio R, Barera G, Di Nardo G, Troncone R, Gianfrani C, Annoni A, Passerini L, Gregori S. Tolerogenic IL-10-engineered dendritic cell-based therapy to restore antigen-specific tolerance in T cell mediated diseases. J Autoimmun. 2023 Jul;138:103051. doi: 10.1016/j.jaut.2023.103051. Epub 2023 May 22. PubMed 37224733 ↗
  • Cook L, Stahl M, Han X, Nazli A, MacDonald KN, Wong MQ, Tsai K, Dizzell S, Jacobson K, Bressler B, Kaushic C, Vallance BA, Steiner TS, Levings MK. Suppressive and Gut-Reparative Functions of Human Type 1 T Regulatory Cells. Gastroenterology. 2019 Dec;157(6):1584-1598. doi: 10.1053/j.gastro.2019.09.002. Epub 2019 Sep 10. PubMed 31513797 ↗
  • Krawiec P, Pawlowska-Kamieniak A, Pac-Kozuchowska E. Interleukin 10 and interleukin 10 receptor in paediatric inflammatory bowel disease: from bench to bedside lesson. J Inflamm (Lond). 2021 Mar 10;18(1):13. doi: 10.1186/s12950-021-00279-3. PubMed 33691712 ↗
  • Parigi TL, D'Amico F, Abreu MT, Dignass A, Dotan I, Magro F, Griffiths AM, Jairath V, Iacucci M, Mantzaris GJ, O'Morain C, Reinisch W, Sachar DB, Turner D, Yamamoto T, Rubin DT, Peyrin-Biroulet L, Ghosh S, Danese S. Difficult-to-treat inflammatory bowel disease: results from an international consensus meeting. Lancet Gastroenterol Hepatol. 2023 Sep;8(9):853-859. doi: 10.1016/S2468-1253(23)00154-1. Epub 2023 Jul 6. PubMed 37423233 ↗
  • Neurath MF, Sands BE, Rieder F. Cellular immunotherapies and immune cell depleting therapies in inflammatory bowel diseases: the next magic bullet? Gut. 2024 Dec 10;74(1):9-14. doi: 10.1136/gutjnl-2024-332919. PubMed 39025492 ↗

Individual participant data

Plan to share: Undecided

09

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Jul 31, 2026, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT07740499
Lead sponsor
IRCCS San Raffaele
Responsible party
Silvia Gregori (Principal Investigator, IRCCS San Raffaele) — Principal investigator
First posted
Jul 31, 2026
Start date
Oct 2026 (estimated)
Primary completion
Oct 2029 (estimated)
Completion
Nov 2029 (estimated)
Last update
Jul 31, 2026

Study contacts

Silvia Gregori, PhD
Contact
gregori.silvia@hsr.it
+390226434894
Laura Passerini, PhD
Contact
passerini.laura@hsr.it
+390226439303
Silvia Gregori, PhD
principal investigator · IRCCS Ospedale San Raffaele
Alessandro Aiuti, MD
principal investigator · IRCCS Ospedale San Raffaele

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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