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RecruitingNCT00692939Updated Dec 15, 2025

Autologous Stem Cell Transplantation for Crohn's Disease

A Phase 1/2 interventional study of autologous CD34-selected peripheral blood stem cells transplant and Alemtuzumab in Crohn's Disease, sponsored by Paul Szabolcs. Recruiting at 2 sites in United States. Open to participants aged 10 Years to 60 Years. Per ClinicalTrials.gov, last updated 2025-12-15.

Sponsored by Paul Szabolcs · Phase 1/2, Interventional, and Treatment

From the registry’s dates

  • Started Jun 2012; still recruiting 14 years 4 months later.
Phase
Phase 1/2
Study type
Interventional
Enrollment
20
Allocation
Not applicable
Ages
10 Years to 60 Years
Sex
All
01

Study summary

The objective of this study is to evaluate the safety and effectiveness of administering high-dose chemotherapy followed by infusion of autologous CD34-selected peripheral blood stem cells (PBSC) in pediatric and adult patients with severe Crohn's disease.

Read the detailed description

Crohn's disease is considered to be an immune-mediated disease of the intestinal tract, typically treated using immune modulating or immune suppressive therapies. These treatments include local anti-inflammatory agents such as 5 aminosalicylic acid products, broad immune suppression using corticosteroids, azathioprine, or methotrexate; cytokine suppression such as antibody against TNFα; IL-12 and antibiotics such as ciprofloxacin and metronidazole that work by decreasing the putative antigen exposure to the intestine. There is little in the literature available on mortality data related to Crohn's Disease, but one series by Farmer et al showed 6% mortality attributable to Crohn's disease. The mortality rate for selective patients with refractory and severe disease is probably higher.

This protocol is based on the premise that the sustained inflammation of the GI tract that is characteristic of Crohn's disease is the result of defective mucosal T cell tolerance. The mucosal tolerance is normally maintained by CD4 + T cells characterized as T helper 3 (Th3) and T regulatory 1 (TR1) T cell clones producing TGFβ and IL-10 respectively. There has been much speculation on a possible infectious etiology of IBD implicating primarily mycobacterial organisms, though despite extensive research no pathogenic organisms have definitively been identified. In genetic cytokine knockout animal models of IBD, the typical nonpathogenic enteric flora is sufficient to induce a chronic inflammatory reaction. Autoreactive T cells appear to have broken through the mucosal tolerance with characteristic T helper 1 cytokine profile secreting IL-1 and IFNγ.

In theory the most efficient approach to eradicate autoimmune T cell clones is through replacement of the defective immune system with hematopoietic stem cells (HSC) from a healthy allogeneic donor. However, the risks of morbidity and mortality associated with allogeneic HSC transplantation currently do not appear to be justified even in treatment of refractory cases of Crohn's disease. An alternative approach is to use autologous HSC from which potential autoreactive T-cells have been eliminated, based on the hypothesis that from the T-cell depleted autologous graft reconstitution of normal immunity will occur without regeneration of autoimmune clones. Pilot trials in Crohn's and other autoimmune diseases have confirmed the validity of this hypothesis. T-cells in the CD34 selected PBSC product are significantly depleted. If active disease recurs despite intensive immunoablation, it is likely that either CD34 selection did not adequately remove cells responsible for the autoreactive state, or that the emerging genetically predisposed immune system was re-exposed to autoantigens.

Unlike allogeneic transplants, the autologous transplant approach has greatly reduced morbidity and mortality due to the absence of graft rejection and graft versus host disease reactions. Currently, autologous HSCT demonstrate that transplant-related mortality is around 5% when transplanted for acute leukemia.

02

Conditions studied

  • Crohn's Disease

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Keywords

  • Stem cell transplantation
  • Crohn's Disease
03

In context

Crohn Disease

1,992 studies on the registry are indexed under Crohn Disease; 478 are open to participants now.

This study's planned enrollment of 20 is below the median of 67 across 1,260 interventional studies indexed under Crohn Disease.

Browse Crohn Disease studies →

Lead sponsor

Paul Szabolcs is the lead sponsor of 9 studies on the registry; 9 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
10 Years to 60 Years
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  1. Subject and/or guardian must be able to understand and provide .
  2. Male or female, 10 through 60 years old, inclusive at time of informed consent.
  3. Examples of subjects for whom stem cell transplant therapy would be appropriate include, but are not limited to:

    • Patients who have had prior surgery and subsequent severe recurrent disease in spite of aggressive maintenance therapy, necessitating consideration of further extensive surgical resections.
    • Patients who have diffuse small bowel and colonic disease and who are to aggressive medical treatment, and not eligible for treatment using a surgical approach without the risk of precipitating short bowel syndrome and dependence of parenteral nutrition or who have other conditions that preclude surgery
    • Patients with a persistently high Harvey Bradshaw Index (HBI) (>6), CDAI (>250) or Pediatric CD Activity Index (PCDAI>45) (44) score or those in the lower, moderate range (HBI ≤ 6), (CDAI \< 250), (PCDAI 30-45), but who are dependent on daily doses of , that are unable to be withdrawn, and aggressive medical treatment to maintain moderate disease status.
    • Patients who have resistant complications of CD unresponsive to medical management including multiple enteric fistulas, enterovesicular or enterovaginal fistulas, severe perianal disease, debilitating arthritis, severe skin lesions (pyoderma), and severe bony complications of the disease and therapy (aseptic necrosis, pathologic fractures).
    • Patients who developed severe complications to while receiving medical management such as pancreatitis following 6-Mercaptopurine, colitis following 5-ASA or those with severe to TNFalpha inhibitors (infliximab, adalimumab, certolizumab pegol), anti-integrin agents (natalizumab, vedolizumab) or anti-IL12/23 agents (ustekinumab).
    • Patients with stomas are eligible.
  4. No surgical therapeutic option secondary to risk of short bowel syndrome or patient refusal.
  5. Harvey Bradshaw Index (HBI) or CD activity score >5, CDAI >250 or PCDAI >30.
  6. count greater than 100,000/mm3.
  7. greater than 1500/mm3 (unless secondary to 6MP therapy).
  8. Creatinine ≤ 2.0 mg/dL.
  9. No history of coronary artery disease; resting ≥ 40% or shortening fraction ≥ 26%.
  10. /FVC ≥ 60% predicted for age; DLCO ≥ 60% predicted value for age.
  11. Negative pregnancy test for females ≥ 10 years old or who have reached menarche, unless surgically sterilized.
  12. All females or and sexually active males must agree to use a FDA approved method of for up to 24 months after PBSC transplant or for as long as they are taking any medication that may harm a pregnancy, an unborn child or may cause a birth defect.

Exclusion criteria

5.2 Exclusion Criteria

  1. Patients who have not been treated with adequate dosing of 6-MP, 5-ASA products and metronidazole.
  2. Patients who achieved a sustained, free response to anti-TNF alpha therapy, anti-integrin therapy or anti-IL12/23 therapy after a 4 month course of treatment.
  3. Toxic megacolon, intestinal perforation
  4. Conjugated > 2.0 mg/dL.
  5. Pregnancy or nursing mother
  6. /HTLV seropositive, , or positive by PCR
  7. Active infection, as determined by the appropriate confirmatory testing e.g. blood cultures, PCR testing, etc., within two weeks of mobilization and high dose chemotherapy.
  8. Past or current medical problems or findings from physical examination or laboratory testing that are not listed above, which, in the opinion of the investigator, may pose additional risks from participation in the study, may interfere with the participant's ability to comply with study requirements or that may impact the quality or interpretation of the data obtained from the study.
Terms in these criteria, in plain language(14)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

Relapsed and refractory

Relapsed: the illness came back after treatment had worked. Refractory: it did not respond to treatment, or stopped responding while still on it.

Corticosteroids (steroids)

Anti-inflammatory medicines such as prednisone, prednisolone and dexamethasone — not the anabolic steroids used for muscle.

Studies differ in what they allow: check which steroid medicines, routes (tablets, injections, creams, inhalers, eye drops) and doses this study accepts.

Hypersensitivity

An allergy, or another reaction of the immune system, to a substance. “Hypersensitivity to the study drug” means a known allergic reaction to it — not every side effect a medicine can have.

Platelets

Blood cells that help blood clot. Too few raises the risk of bleeding and bruising. A usual adult range is about 150–400 × 10⁹/L (150,000–400,000 per µL); each lab has its own reference range.

Absolute neutrophil count (ANC)

The number of neutrophils, white blood cells that help fight infection, in a given amount of blood. Too few raises the risk of infection.

It is a count, not a percentage of the white cells. Limits are written in units that mean the same: ≥ 1.5 × 10⁹/L is ≥ 1,500 per mm³ (µL). Each lab has its own reference range.

LVEF (left ventricular ejection fraction)

The share of blood the heart’s main pumping chamber (the left ventricle) pushes out with each beat, measured by an echocardiogram (heart ultrasound) or a MUGA scan. About 50–70% is normal.

FEV1

From a breathing test (spirometry): how much air you can blow out in the first second. Often given as a percentage of what is expected for your age, height and sex.

Childbearing potential

Able to become pregnant: from the first period until menopause, unless permanently unable to through surgery (removal of the womb, or of both ovaries or both fallopian tubes).

Criteria for people of childbearing potential usually ask for a negative pregnancy test and for contraception during the study and for a time after it.

Contraception

Ways of preventing pregnancy. “Highly effective” methods fail less than 1% of the time a year when used correctly — for example an IUD or an implant.

Criteria usually say which methods count and how long to keep using them after the last dose, sometimes for male participants too. Some studies accept a partner’s vasectomy if it was confirmed successful and that person is the participant’s only sexual partner.

Bilirubin

A yellow substance made when red blood cells are broken down, which the liver clears. A high level can mean a problem with the liver or the bile ducts.

Criteria often allow more for people with Gilbert’s syndrome, a harmless inherited condition that raises bilirubin.

HIV

The human immunodeficiency virus, which weakens the immune system.

Many studies now accept people whose HIV is controlled on treatment, judged by the viral load and the CD4 count. Check the limits this study sets.

Hepatitis B tests

Hepatitis B is a virus that infects the liver. These are separate tests: HBsAg positive usually means a current infection (a recent vaccination can briefly cause it too); total anti-HBc (HBcAb) positive means an infection now or in the past; HBV DNA measures how much virus is in the blood.

Some studies accept a past infection if HBV DNA is undetectable, sometimes with antiviral medicine during the study. Check what this study allows.

Hepatitis C tests

Hepatitis C is a virus that infects the liver. An HCV antibody test can stay positive after an infection has cleared (and is occasionally positive without one); an HCV RNA test shows whether the virus is there now.

After treatment, hepatitis C counts as cured when HCV RNA is still undetectable 12 weeks or more after the treatment ended. Studies often accept people cured this way.

05

Study design

Phase
Phase 1 / Phase 2
Primary purpose
Treatment
Allocation
Not applicable
Intervention model
Single group
Masking
None (open label)
Enrollment
20 participants (estimated)

Study arms

  • Experimental
    1

    High-dose immunotherapy followed by infusion of autologous CD34-selected peripheral blood stem cells (PBSC)

    Biological: autologous CD34-selected peripheral blood stem cells transplant · Drug: Alemtuzumab · Drug: ATG · Drug: Melphalan · Drug: Thiotepa · Drug: Rituximab · Drug: Cyclophosphamide · Drug: G-CSF · Drug: Mesna

Interventions

  • Biologicalautologous CD34-selected peripheral blood stem cells transplant

    high-dose immunotherapy followed by infusion of autologous CD34-selected peripheral blood stem cells (PBSC)

  • Transplant conditioning

    Also known as: Campath-1H

  • DrugATG

    Transplant conditioning

    Also known as: Anti-thymocyte globulin, rabbit; Thymoglobulin

  • Transplant conditioning

    Also known as: L-phenylalanine mustard, phenylalanine mustard, L-PAM, or L-sarcolysin

  • Transplant conditioning

  • Transplant conditioning

    Also known as: Rituxan

  • Mobilization

    Also known as: Cytoxan

  • DrugG-CSF

    Mobilization

    Also known as: Neupogen, Granix, Zarxio, Filgrastim

  • DrugMesna

    Mobilization

06

What researchers measure

Primary outcomes

  1. Number of participants with regimen-related toxicities.

    Time frame: From baseline to 24 months post bone marrow transplant

  2. Number of participants with life-threatening infections.

    Time frame: From baseline to 24 months post bone marrow transplant

  3. Change and duration in the Harvey Bradshaw Index (HBI).

    Time frame: Change from Baseline to 24 months post Bone Marrow Transplant

  4. Change and duration in the Crohn's Disease Activity Index (CDAI).

    Time frame: Change from Baseline to 24 months post Bone Marrow Transplant

  5. Change and duration in the Pediatric Crohn's Disease Activity Index (PCDAI).

    Time frame: Change from Baseline to 24 months post Bone Marrow Transplant

Secondary outcomes

  1. Number of days it takes for Absolute Neutrophil Count (ANC) to reach greater than 500.

    Time frame: 3 consecutive days once ANC is greater than 500.

  2. Number of days it takes for Platelet count to reach greater than 20,000/mm3

    Time frame: From baseline to 24 months post Bone Marrow Transplant.

  3. Number of days it takes for T cell Recovery

    Time frame: 24 months post Bone Marrow Transplant

  4. Number of participants who have long term cardiac complications

    Time frame: 24 months post Bone Marrow Transplant

  5. Number of participants who have long term endocrine complications

    Time frame: 24 months post Bone Marrow Transplant

  6. Number of participants with active advanced Crohn's disease who have immune dysregulation evolution and correction.

    Time frame: From Baseline to 24 months post bone marrow transplant

  7. Biomarker identification for relapse

    Time frame: From baseline to 24 months post bone marrow transplant

07

Study locations

2 of 2 sites recruiting
  • UPMC Prebyterian- Adult Gastroenterology
    Pittsburgh, Pennsylvania 15213, United States
    Recruiting
  • Children's Hospital of Pittsburgh of UPMC-Bone Marrow Team
    Pittsburgh, Pennsylvania 15224, United States
    Recruiting
    • Shawna H McIntyre, RN · Contactmcintyresm@upmc.edu · 412-692-5552
    • Paul Szabolcs, MD · Principal investigator
08

References and documents

Individual participant data

Plan to share: No

No publications or documents are linked to this record.

09

Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reached

Started Jun 2012 (actual). Primary completion is estimated for Dec 2026, 174 months after the start.

How these figures are worked out, and which studies are left out of them.

Registered
Jun 3, 2008
First posted
Jun 6, 2008
StartActual
Jun 26, 2012
Primary completionEst.
Dec 2026
CompletionEst.
Dec 2027
Last update
Dec 15, 2025
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Dec 15, 2025, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT00692939
Lead sponsor
Paul Szabolcs
Responsible party
Paul Szabolcs (Chief, Division of Blood and Marrow Transplantation and Cell Therapy, University of Pittsburgh) — Sponsor-investigator
First posted
Jun 6, 2008
Start date
Jun 26, 2012
Primary completion
Dec 2026 (estimated)
Completion
Dec 2027 (estimated)
Last update
Dec 15, 2025

Study contacts

Shawna H McIntyre, RN
Contact
mcintyresm@upmc.edu
412-692-5552 ext. 4126925552
Paul Szabolcs, MD
principal investigator · University of Pittsburgh

Oversight

Data monitoring committee
Yes
FDA-regulated drug
Yes
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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