ClinicalTrials.gg
RecruitingNCT07718061Ortho-PerioUpdated Jul 28, 2026

Bacterial Diversity Study Using 16S rRNA Sequencing of Periodontal Samples From Patients With Orthodontic Retainers

An interventional study of Fixed Orthodontic Retainer and Removable Essix-Type Orthodontic Retainer in Fixed Orthodontic Retainer, Orthodontic Appliances, Removable and Orthodontic Appliance Complication, sponsored by Universidad de Murcia. Recruiting at 1 site in Spain. Open to participants aged 18 Years to 40 Years. Per ClinicalTrials.gov, last updated 2026-07-28.

Sponsored by Universidad de Murcia · Not applicable, Interventional, and Other

From the registry’s dates

  • Registered 6 months after the study started (first participant enrolled Jan 2026, registered Jul 2026).
  • Started Jan 2026; still recruiting 10 months later.
Phase
Not applicable
Study type
Interventional
Enrollment
10
Allocation
Non-randomized
Ages
18 Years to 40 Years
Sex
All
01

Study summary

After completion of orthodontic treatment, a retention phase is required to prevent relapse of tooth malposition. Fixed retention in the mandibular anterior region is commonly used. This type of retainer is bonded to the lingual surfaces of the canines and incisors and may hinder oral hygiene, thereby promoting bacterial plaque accumulation and gingival inflammation.

Currently, probably due to the increasing use of clear aligner therapy, clear removable Essix-type retainers are becoming more widely used. Since these retainers can be removed by the patient, they may facilitate oral hygiene. However, studies assessing gingival health and the composition of the subgingival microbiota in patients wearing orthodontic retainers remain scarce.

Therefore, the aim of this study will be to assess the composition of the gingival sulcus microbiota and gingival health in patients wearing fixed or removable orthodontic retainers.

Ten adult patients who have completed orthodontic treatment will be recruited and divided into two groups:

  1. Fixed retention group.
  2. Removable retention group.

Periodontal parameters will be assessed, and bacterial plaque samples will be collected from the gingival sulcus at five time points:

T0: Bracket removal and dental scaling appointment. Periodontal parameters will be assessed, and plaque samples will be collected before bracket debonding and dental scaling.

T1: Retainer placement appointment, three days after T0. Periodontal parameters will be assessed, and plaque samples will be collected before retainer placement.

T2: One month after retainer placement.

T3: Three months after retainer placement.

T4: Six months after retainer placement.

Read the detailed description

The objectives of this study are:

  1. To compare the gingival sulcus microbiota in patients wearing fixed versus removable orthodontic retainers.
  2. To compare periodontal health in patients wearing fixed versus removable orthodontic retainers.

This prospective interventional comparative study will evaluate changes in gingival health and in the subgingival microbiota of adult patients following completion of orthodontic treatment with fixed multibracket appliances.

Ten participants attending the University Dental Clinic will be assigned to one of two retention groups: a fixed mandibular retainer group or a removable Essix-type retainer group.

Participants in the fixed retention group will receive a lingual retainer bonded from the mandibular left canine to the mandibular right canine, corresponding to teeth 33 to 43 according to the FDI tooth-numbering system. The same type of wire and bonding material will be used for all participants in this group.

Participants in the removable retention group will receive a clear Essix-type retainer manufactured using the same material and by the same dental technician. Participants will be instructed to wear the retainer for 22 hours per day.

To standardize oral hygiene procedures, all participants will receive the same oral hygiene instructions and an oral hygiene kit for use throughout the study period.

Clinical periodontal assessments and subgingival plaque sampling will be performed at five study visits:

T0: On the day of bracket removal and dental scaling. Periodontal assessments and plaque sampling will be performed before bracket debonding and scaling.

T1: Three days after T0, immediately before retainer placement.

T2: One month after retainer placement.

T3: Three months after retainer placement.

T4: Six months after retainer placement.

At each visit, periodontal health will be evaluated using plaque accumulation, bleeding on probing, probing pocket depth, clinical attachment level, and gingival recession.

Subgingival plaque samples will be collected from the mandibular anterior region using sterile paper points. Sampling will be performed at the mesial surface of each mandibular canine and at the mesial and distal surfaces of each mandibular incisor. The gingival tissue will be gently displaced to allow insertion of the paper point into the gingival sulcus without bending or contaminating the sample.

After collection, the portion of the paper point inserted into the gingival sulcus will be placed in an Eppendorf tube containing sterile phosphate-buffered saline. Samples will be stored at -22 °C until microbiological analysis.

The bacterial composition of the samples will be assessed using 16S ribosomal RNA gene sequencing. Changes in microbiota composition and periodontal parameters over time will be compared between the fixed and removable retention groups.

Participants will be instructed not to eat, drink, brush their teeth, or use mouthwash for at least two hours before each plaque-sampling visit.

02

Conditions studied

  • Fixed Orthodontic Retainer
  • Orthodontic Appliances, Removable
  • Orthodontic Appliance Complication
  • Gingivitis
  • Periodontal Diseases

Keywords

  • Orthodontic retainer
  • Periodontal health
  • Gingivitis
  • Microbiota
03

In context

Gingivitis

631 studies on the registry are indexed under Gingivitis; 107 are open to participants now.

This study's planned enrollment of 10 is below the median of 66 across 507 interventional studies indexed under Gingivitis.

Browse Gingivitis studies →

Lead sponsor

Universidad de Murcia is the lead sponsor of 79 studies on the registry; 17 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years to 40 Years
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Treatment involving both dental arches
  • Permanent dentition with at least 24 teeth
  • Treatment duration longer than 12 months
  • Treatment using the Versatile MBT system with a 0.022-inch slot

Exclusion criteria

Exclusion Criteria:

  • Patients with systemic disease or taking medications that may affect periodontal health
  • Inadequate restorations or active carious lesions
  • iodontal disease
  • Plaque index greater than 20% before placement of the retainer or during the study
  • Use of oral antiseptics within the previous 6 months or during the study period
  • Use of antibiotics within the previous 14 days or during the study period
  • Smokers
  • Pregnant or breastfeeding women
  • Presence of open gingival embrasures, crowding, or dental malposition in the mandibular anterior region after orthodontic treatment
05

Study design

Phase
Not applicable
Primary purpose
Other
Allocation
Non-randomized
Intervention model
Parallel assignment
Masking
Single (Outcomes assessor)
Enrollment
10 participants (estimated)

Study arms

  • Active comparator
    Fixed Orthodontic Retention

    Participants assigned to this arm will receive a fixed lingual orthodontic retainer bonded to the mandibular anterior teeth, extending from tooth 33 to tooth 43. The same retainer wire and bonding materials will be used for all participants

    Device: Fixed Orthodontic Retainer

  • Experimental
    Removable Essix-Type Orthodontic Retention

    Participants assigned to this arm will receive a clear removable Essix-type orthodontic retainer. Participants will be instructed to wear the retainer for 22 hours per day. All retainers will be manufactured using the same material and by the same dental technician.

    Device: Removable Essix-Type Orthodontic Retainer

Interventions

  • DeviceFixed Orthodontic Retainer

    A fixed lingual orthodontic retainer bonded to the mandibular anterior teeth, extending from tooth 33 to tooth 43

  • DeviceRemovable Essix-Type Orthodontic Retainer

    A clear removable Essix-type orthodontic retainer prescribed for 22 hours of daily wear

06

What researchers measure

Primary outcomes

  1. Longitudinal change in subgingival microbial community composition assessed using Bray-Curtis dissimilarity

    Subgingival plaque samples collected from the mandibular anterior teeth will be analyzed using 16S rRNA gene sequencing. Overall microbial community composition will be assessed using the Bray-Curtis dissimilarity index. Longitudinal differences in microbial community composition will be evaluated between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers, considering the effect of study group, assessment time point, and their interaction.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  2. Longitudinal change in bleeding on probing

    Bleeding on probing will be recorded as present or absent at six sites per tooth in the mandibular anterior region following gentle periodontal probing. The outcome will be calculated as the percentage of examined sites showing bleeding for each participant. Longitudinal changes in bleeding on probing will be compared between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers, considering the effect of study group, assessment time point, and their interaction.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

Secondary outcomes

  1. Longitudinal change in subgingival microbial alpha diversity assessed using the Shannon diversity index

    Subgingival plaque samples collected from the mandibular anterior teeth will be analyzed using 16S rRNA gene sequencing. Alpha diversity will be quantified using the Shannon diversity index for each sample. Higher values indicate greater microbial diversity within the sample. Longitudinal changes will be compared between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers, considering study group, assessment time point, and their interaction. Time Frame

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  2. Longitudinal change in subgingival microbial evenness assessed using Pielou's evenness index

    Microbial community evenness will be quantified using Pielou's evenness index calculated from the 16S rRNA gene sequencing data. The index ranges from 0 to 1, with higher values indicating a more even distribution of bacterial taxa within the microbial community. Longitudinal changes will be compared between the fixed-retainer and removable-retainer groups across all study visits.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  3. Longitudinal change in subgingival microbial dominance assessed using the Simpson dominance index

    Microbial dominance will be quantified using the Simpson dominance index calculated from the 16S rRNA gene sequencing data. Higher index values indicate greater dominance of the microbial community by a limited number of bacterial taxa. Longitudinal changes will be compared between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers across all study visits.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  4. Longitudinal change in subgingival microbial taxonomic composition

    The relative abundance of bacterial taxa identified by 16S rRNA gene sequencing will be calculated as the percentage of sequencing reads assigned to each taxon. Taxonomic composition will be evaluated at the phylum, family, and genus levels and, where technically feasible, at the species level. Longitudinal changes will be compared between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  5. Differential abundance of subgingival bacterial taxa

    Differential abundance analysis will be performed using 16S rRNA gene sequencing data to identify bacterial taxa whose abundance differs between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers, as well as taxa showing changes over time within each group. Correction for multiple comparisons will be applied.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  6. Longitudinal change in plaque index

    The presence or absence of dental plaque will be recorded at six surfaces per tooth in the mandibular anterior region: three buccal surfaces and three lingual surfaces. The plaque index will be calculated for each participant as the percentage of examined surfaces showing detectable plaque. Longitudinal changes will be compared between participants receiving fixed orthodontic retainers and those receiving removable Essix retainers.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  7. Longitudinal change in periodontal probing depth

    Periodontal probing depth will be measured in millimeters from the gingival margin to the base of the gingival sulcus or periodontal pocket using a periodontal probe. Measurements will be recorded at six sites per tooth in the mandibular anterior region. The mean probing depth will be calculated for each participant, and longitudinal changes will be compared between study groups.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  8. Longitudinal change in clinical attachment level

    Clinical attachment level will be measured in millimeters from the cementoenamel junction to the base of the gingival sulcus or periodontal pocket. Measurements will be recorded at six sites per tooth in the mandibular anterior region. The mean clinical attachment level will be calculated for each participant, and longitudinal changes will be compared between study groups.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

  9. Longitudinal change in gingival recession

    Gingival recession will be measured in millimeters from the cementoenamel junction to the gingival margin when the gingival margin is located apical to the cementoenamel junction. Measurements will be recorded at six sites per tooth in the mandibular anterior region. The mean gingival recession will be calculated for each participant, and longitudinal changes will be compared between study groups.

    Time frame: T0: pre-debonding; T1: pre-retainer baseline, 3 days after T0; T2: 1 month post-retainer; T3: 3 months post-retainer; T4: 6 months post-retainer.

07

Study locations

1 of 1 sites recruiting
  • University Dental Clinic
    Murcia, 30008, Spain
    Recruiting
    • Ascensión Vicente, DDS PhD · Contactascenvi@um.es · +34868888664
08

References and documents

Publications

  • Yanez-Vico RM, Iglesias-Linares A, Ballesta-Mudarra S, Ortiz-Ariza E, Solano-Reina E, Perea EJ. Short-term effect of removal of fixed orthodontic appliances on gingival health and subgingival microbiota: a prospective cohort study. Acta Odontol Scand. 2015;73(7):496-502. doi: 10.3109/00016357.2014.993701. Epub 2015 Jan 29. PubMed 25631494 ↗
  • Choi DS, Cha BK, Jost-Brinkmann PG, Lee SY, Chang BS, Jang I, Song JS. Microbiologic changes in subgingival plaque after removal of fixed orthodontic appliances. Angle Orthod. 2009 Nov;79(6):1149-55. doi: 10.2319/111808-593R.1. PubMed 19852608 ↗
  • Pan S, Liu Y, Zhang L, Li S, Zhang Y, Liu J, Wang C, Xiao S. Profiling of subgingival plaque biofilm microbiota in adolescents after completion of orthodontic therapy. PLoS One. 2017 Feb 3;12(2):e0171550. doi: 10.1371/journal.pone.0171550. eCollection 2017. PubMed 28158292 ↗
  • Levin L, Samorodnitzky-Naveh GR, Machtei EE. The association of orthodontic treatment and fixed retainers with gingival health. J Periodontol. 2008 Nov;79(11):2087-92. doi: 10.1902/jop.2008.080128. PubMed 18980517 ↗
  • Manzon L, Fratto G, Rossi E, Buccheri A. Periodontal health and compliance: A comparison between Essix and Hawley retainers. Am J Orthod Dentofacial Orthop. 2018 Jun;153(6):852-860. doi: 10.1016/j.ajodo.2017.10.025. PubMed 29853243 ↗
  • Al-Moghrabi D, Johal A, O'Rourke N, Donos N, Pandis N, Gonzales-Marin C, Fleming PS. Effects of fixed vs removable orthodontic retainers on stability and periodontal health: 4-year follow-up of a randomized controlled trial. Am J Orthod Dentofacial Orthop. 2018 Aug;154(2):167-174.e1. doi: 10.1016/j.ajodo.2018.01.007. PubMed 30075919 ↗
  • Rody WJ Jr, Elmaraghy S, McNeight AM, Chamberlain CA, Antal D, Dolce C, Wheeler TT, McGorray SP, Shaddox LM. Effects of different orthodontic retention protocols on the periodontal health of mandibular incisors. Orthod Craniofac Res. 2016 Nov;19(4):198-208. doi: 10.1111/ocr.12129. Epub 2016 Sep 20. PubMed 27647720 ↗
  • Eroglu AK, Baka ZM, Arslan U. Comparative evaluation of salivary microbial levels and periodontal status of patients wearing fixed and removable orthodontic retainers. Am J Orthod Dentofacial Orthop. 2019 Aug;156(2):186-192. doi: 10.1016/j.ajodo.2018.08.022. PubMed 31375228 ↗
  • Li B, Lu C, Yao X, Wu X, Wu G, Zeng X. Effects of three orthodontic retainers on periodontal pathogens and periodontal parameters. Sci Rep. 2023 Nov 24;13(1):20709. doi: 10.1038/s41598-023-46922-2. PubMed 38001102 ↗

Individual participant data

Plan to share: Undecided

09

Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reachedSimilar studies: half by the dot; the band is the middle halfHalf of similar studies reached it by the dot; the band is the middle half, from a quarter to three quarters

Started Jan 2026 (actual). Primary completion is estimated for Jul 2027, 18 months after the start.

Of 204 non-industry interventional studies with no phase under Gingivitis, half reached primary completion within 9 months of starting (the median), counting those still running; a quarter within 4 and three quarters within 18. This study's planned 18 months is above that.

Counting every sponsor, half of 257 studies reached it within 7 months; a quarter within 3 and three quarters within 15.

How these figures are worked out, and which studies are left out of them.

Registered
Jul 16, 2026
First posted
Jul 21, 2026
StartActual
Jan 12, 2026
Primary completionEst.
Jul 2027
CompletionEst.
Jul 2027
Last update
Jul 28, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Jul 28, 2026, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT07718061
Lead sponsor
Universidad de Murcia
Responsible party
Sponsor
First posted
Jul 21, 2026
Start date
Jan 12, 2026
Primary completion
Jul 2027 (estimated)
Completion
Jul 2027 (estimated)
Last update
Jul 28, 2026

Study contacts

Ascensión Vicente, DDS PhD
Contact
ascenvi@um.es
+3486888664
Antonio J Ortiz Ruiz, MD PhD
study chair · Universidad de Murcia

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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