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Not yet recruitingNCT07546773Updated May 4, 2026

Metagenomic Analysis and Postoperative Pain in Infected Root Canals Using Different Irrigation Protocols

An interventional study of Ultrasonic Irrigation Activation and Laser-Activated Irrigation in Dental Pulp Necrosis and Pulpitis, sponsored by Suez Canal University. Not yet recruiting at 1 site in Egypt. Open to participants aged 18 Years to 60 Years. Per ClinicalTrials.gov, last updated 2026-05-04.

Sponsored by Suez Canal University · Not applicable, Interventional, and Treatment

Phase
Not applicable
Study type
Interventional
Enrollment
40
Allocation
Randomized
Ages
18 Years to 60 Years
Sex
All
01

Study summary

Achieving effective root canal disinfection while minimizing postoperative pain is a critical goal in endodontic therapy. Advanced irrigation protocols, such as ultrasonic activation, laser activation, negative pressure irrigation (PulpSucker device), and mechanical activation (Easy Clean device), have shown promise in enhancing bacterial reduction within the root canal system. However, their impact on postoperative pain has not been fully explored.

This randomized controlled clinical trial aims to compare bacterial reduction and postoperative pain levels in infected root canals using four different irrigation protocols. The study will use metagenomic analysis to evaluate changes in bacterial community composition and the Visual Analogue Scale (VAS) to assess patient-reported pain levels at multiple time points postoperatively.

Read the detailed description

Background: Effective bacterial reduction in root canals remains a significant challenge in endodontics due to complex bacterial communities, including species like Enterococcus faecalis that resist conventional treatment methods. Advanced irrigation protocols offer innovative solutions by disrupting biofilms and ensuring deeper penetration of irrigants into apical regions of the canal system.

Study Design: This is a randomized, parallel-group clinical trial involving 40 adult patients (18-60 years) requiring root canal treatment for teeth with necrotic pulp and periapical radiolucency. Patients will be randomly assigned to one of four irrigation protocol groups (10 patients per group):

Group 1: Ultrasonic Activation

Group 2: Laser Activation with methylene blue

Group 3: Mechanical Activation (Easy Clean device)

Group 4: Negative Pressure Irrigation (PulpSucker device)

Procedures: All patients will undergo standardized root canal preparation using rotary nickel-titanium files. Pre-irrigation bacterial samples will be collected before instrumentation, and post-irrigation samples will be collected after the irrigation protocol. All samples will undergo next-generation sequencing (NGS) for metagenomic analysis to assess bacterial reduction and community composition changes.

Outcomes: Postoperative pain will be evaluated using the Visual Analogue Scale (VAS) at 6 hours, 24 hours, 48 hours, and 7 days post-treatment. Statistical analyses will compare bacterial reduction efficacy and pain levels across all four groups.

02

Conditions studied

  • Dental Pulp Necrosis
  • Pulpitis

Keywords

  • Root canal treatment
  • Irrigation protocol
  • Ultrasonic activation
  • Laser activation
  • Negative pressure irrigation
  • Mechanical activation
  • Metagenomic analysis
  • Postoperative pain
  • Visual analogue scale
  • Bacterial reduction
  • Endodontics
  • PulpSucker
  • Easy clean device
  • Next generation sequencing
03

In context

Dental Pulp Necrosis

156 studies on the registry are indexed under Dental Pulp Necrosis; 43 are open to participants now.

This study's planned enrollment of 40 is below the median of 45 across 147 interventional studies indexed under Dental Pulp Necrosis.

Browse Dental Pulp Necrosis studies →

Lead sponsor

Suez Canal University is the lead sponsor of 164 studies on the registry; 38 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years to 60 Years
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Adult patients aged 18-60 years
  • Requiring root canal treatment for teeth with necrotic pulp
  • Presence of periapical radiolucency confirmed radiographically
  • Good general health with no systemic diseases affecting healing outcomes
  • Willing to provide informed written consent
  • Available for follow-up appointments

Exclusion criteria

Exclusion Criteria:

  • Patients with open apices
  • Severe periodontal disease
  • Currently taking antibiotics
  • Allergy to study materials (lidocaine, sodium hypochlorite, methylene blue, latex)
  • Pregnant or breastfeeding women
  • Compromised immunity or systemic conditions (e.g., uncontrolled diabetes, , therapy)
  • Previous root canal treatment on the study tooth
  • Tooth not restorable
  • Presence of vertical root fracture
Terms in these criteria, in plain language(2)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

HIV

The human immunodeficiency virus, which weakens the immune system.

Many studies now accept people whose HIV is controlled on treatment, judged by the viral load and the CD4 count. Check the limits this study sets.

Immunosuppression

A weakened immune system. It can come from an illness, such as HIV or some blood cancers, or from medicines that turn the immune system down, for example after an organ transplant or for an autoimmune disease; steroids at higher doses count.

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05

Study design

Phase
Not applicable
Primary purpose
Treatment
Allocation
Randomized
Intervention model
Parallel assignment
Masking
None (open label)
Enrollment
40 participants (estimated)

Study arms

  • Experimental
    Ultrasonic Activation

    Root canals will be irrigated with sodium hypochlorite (NaOCl) activated using an ultrasonic device (Ultramint with R17 tip).

    Procedure: Ultrasonic Irrigation Activation

  • Experimental
    ARM 2: Laser Activation

    Root canals will be irrigated with NaOCl activated using a diode laser device (Elexxon Pico, Germany) with methylene blue (0.1 mg/mL) as a photosensitizer to enhance antimicrobial effects.

    Procedure: Laser-Activated Irrigation

  • Experimental
    ARM 3: Mechanical Activation (Easy Clean)

    Root canals will be irrigated with NaOCl, activated mechanically using the Easy Clean device (BassiEndo) to create a swirling motion for improved disinfection.

    Procedure: Mechanical Irrigation Activation

  • Experimental
    ARM 4: Negative Pressure Irrigation (PulpSucker)

    Root canals will be irrigated with NaOCl using the PulpSucker device (PlanB dental), which employs negative pressure irrigation to ensure continuous delivery and debris removal.

    Procedure: Negative Pressure Irrigation

Interventions

  • ProcedureUltrasonic Irrigation Activation

    Sodium hypochlorite irrigation activated with ultrasonic device

    Also known as: Group-I

  • ProcedureLaser-Activated Irrigation

    Laser-activated sodium hypochlorite with methylene blue photosensitizer

    Also known as: Group-II

  • ProcedureMechanical Irrigation Activation

    Mechanical activation device creating swirling motion

  • ProcedureNegative Pressure Irrigation

    Continuous irrigation with negative pressure suction

06

What researchers measure

Primary outcomes

  1. Outcome 1: Bacterial Reduction

    Change in bacterial load (CFU/mL or relative abundance via metagenomic sequencing). Bacterial samples collected before and after irrigation protocol using sterile paper points, analyzed via next-generation sequencing (NGS) to assess bacterial reduction and changes in microbial community composition

    Time frame: Pre-irrigation (baseline "Day-1") to post-irrigation "Day-1" after irrigation)

  2. Outcome 2: Postoperative Pain Level

    Patient-reported pain intensity using VAS where 0=no pain, 1-3=mild pain, 4-6=moderate pain, 7-9=severe tolerable pain, 10=severe intolerable pain. Measure: Visual Analogue Scale (VAS) score (0-10 scale)

    Time frame: 6 hours, 24 hours, 48 hours, and 7 days post-treatment

Secondary outcomes

  1. Bacterial Community Composition

    Changes in bacterial diversity and species abundance via metagenomic analysis. Next-generation sequencing analysis to identify changes in bacterial species composition and microbial diversity indices.

    Time frame: Pre-irrigation (baseline "Day-1") to post-irrigation "Day-1" after irrigation)

  2. Correlation Between Bacterial Reduction and Pain

    Statistical correlation coefficient between bacterial load reduction and VAS scores. Pearson or Spearman correlation analysis to evaluate relationship between irrigation efficacy and postoperative pain levels.

    Time frame: Post-irrigation bacterial analysis correlated with pain scores at 6 hours, 24 hours, 48 hours, and 7 days

07

Study locations

1 site
  • Endodontic Clinic, Faculty of Dentistry, Suez Canal University
    Ismailia, Ismailia Governorate 41522, Egypt
    • Salma Mohamed Hassan Gohar, MSc · ContactSalma_gohar@dent.suez.edu.eg · 00201157445565
    • Hayam Youssef Hassan, Professor, PhD · Contact+20 1227609611
08

References and documents

Study documents

PDFs hosted by the registry, ClinicalTrials.gov.

Individual participant data

Plan to share: Undecided

09

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on May 4, 2026, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT07546773
Responsible party
Salma gohar (Assistant Lecturer, Department of Endodontics, Suez Canal University) — Principal investigator
First posted
Apr 23, 2026
Start date
Apr 30, 2026 (estimated)
Primary completion
Aug 15, 2027 (estimated)
Completion
Jan 15, 2028 (estimated)
Last update
May 4, 2026

Study contacts

Salma Mohamed Hassan Gohar, MSc
Contact
Salma_gohar@dent.suez.edu.eg
0020 1157445565
Salah El-Din Mohamed Abdallah, Professor, PhD
study director · Professor of Microbiology, Faculty of Pharmacy, Suez Canal University
Hayam Youssef Hassan, Professor, PhD
study chair · Professor of Endodontics, Faculty of Dentistry, Suez Canal University

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

Not currently enrolling

This study is not yet recruiting, as verified in Apr 2026. You cannot join it, but the record below documents what was studied.

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