ClinicalTrials.gg
RecruitingNCT04878549TRiPUpdated Mar 3, 2025

Transcriptomic Responses for the Identification of Pathogens

An observational study in Enteric Fever, Acute Febrile Illness and Typhoid, sponsored by University of Sheffield. Recruiting at 1 site in India. Open to participants aged 2 Years to 65 Years, including healthy volunteers. Per ClinicalTrials.gov, last updated 2025-03-03.

Sponsored by University of Sheffield · Observational

From the registry’s dates

  • Primary completion was expected by Jun 2025, 1 year 5 months ago, but the record still lists the study as recruiting.
  • Started May 2022; still recruiting 4 years 6 months later.
Study type
Observational
Model
Cohort
Time perspective
Prospective
Enrollment
2,000
Ages
2 Years to 65 Years
Sex
All
01

Study summary

Acute undifferentiated febrile infection (AUFI) is a common presenting syndrome in low-resource settings and better diagnostics are urgently needed to improve patient management and guide disease prevention interventions. Assessment of the host gene expression response to infection in endemic populations has demonstrated significant promise as a new approach to identifying patients with enteric fever and for potential in differentiating between other causes of AUFI. Signatures identified through new data analytic techniques could be developed into a point-of-care test for use in endemic settings.

In this multisite diagnostic evaluation study we will collect prospective clinical, laboratory and diagnostic data from two endemic settings to evaluate host gene expression signatures for detecting enteric fever and for determining the cause of AUFI in LMIC settings.

02

Conditions studied

  • Enteric Fever
  • Acute Febrile Illness
  • Typhoid
  • Paratyphoid Fever
  • Fever

Browse trials for

Keywords

  • Gene Expression Profiling
  • RNA-Seq
03

In context

Typhoid Fever

76 studies on the registry are indexed under Typhoid Fever; 11 are open to participants now.

This study's planned enrollment of 2,000 is above the median of 1,485 across 10 observational studies indexed under Typhoid Fever.

Browse Typhoid Fever studies →

Lead sponsor

University of Sheffield is the lead sponsor of 75 studies on the registry; 16 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
2 Years to 65 Years
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

We will recruit adults aged 15 to 65 years presenting to hospital with fever at 2 sites: 1 in Asia and 1 in Africa where enteric fever is endemic. All included febrile participants will have a (documented) tympanic/rectal temperature of ≥ 38°C or an axillary/oral temperature of ≥ 37.8°C on presentation and will report a history of fever within the last 24 hours lasting 3 to 14 days. In parallel, healthy community control participants will be recruited from each site catchment area during the course of the study with enrolment designed to result in an even representation of age groups and seasonal variation. Identified signatures of infection will be explored in a cohort of febrile children aged 2 to 14 years at each site. 600 febrile adults, 200 febrile children and 200 afebrile adult controls will be recruited at each site.

Eligibility criteria

FEBRILE ADULTS- INCLUSION CRITERIA

  • Age greater than or equal to 15 years and less than or equal to 65 years
  • Participant is willing and they and/or an appropriate guardian/relative/representative is able to give for participation in the study and a follow-up (telephone) discussion at 14 days
  • And either:

    1. Febrile illness without localising features (see 'exclusion criteria' and 'screening' sections) where fever is defined as:

      • documented tympanic/rectal temperature of ≥ 38°C or an axillary/oral temperature of ≥ 37.8°C, or a reported fever within the last 24 hours and
      • Reported duration of fever 3-14 days or
    2. Recently confirmed blood culture indicating enteric fever (confirmed within the previous 5 days)
  • They may have had recent exposure to antimicrobials.

FEBRILE ADULTS- EXCLUSION CRITERIA

  • The participant may not enter the study if ANY of the following apply:
  • Unable to provide informed consent and no next of kin is willing and able to provide informed consent.
  • For patients with febrile illness (included in (1) above): Any history or clinical suspicion of:

    • Rheumatological or connective tissue disorder (e.g. Rheumatoid arthritis)
    • condition (e.g. Autoimmune Hepatitis)
    • Active treatment with immunomodulating medications, or for tuberculosis (pulmonary or extrapulmonary) or any other chronic infection.
  • Pregnancy (breast feeding mothers will NOT be excluded)
  • No hospitalisation for more than 48 hours in the last 4 weeks
  • Vaccination within 4 weeks prior to current admission
  • Localising signs or symptoms of infection sufficient to diagnose the likely cause of acute febrile illness and thus prevent it from being 'undifferentiated.'

CONTROLS- INCLUSION CRITERIA

  • Participant is willing and they are (and in 15-18 year olds, a guardian is) able to give informed consent for participation in the study
  • Age greater than or equal to 15 years and less than or equal to 65 years
  • They live outside of the normal/local catchment area for each hospital site
  • Afebrile (as defined by no reported fever and temperature ≤ 38°C or an axillary/oral temperature of ≤ 37.8°C).

CONTROLS- EXCLUSION CRITERIA

  • The participant may not enter the study if ANY of the following apply:
  • Unable to provide informed consent and no next of kin (or parent/guardian in the case of a minor) is willing and able to provide informed consent.
  • Current treatment for or prior history, or clinical suspicion of:

    • Rheumatological or connective tissue disorder
    • Autoimmune condition
    • Malignancy
    • Active treatment for tuberculosis (pulmonary or extrapulmonary) or clinical suspicion of active tuberculosis. Previous completed treatment is not a reason for exclusion.
    • Active treatment with immunomodulating medications or any other chronic infection.
  • Pregnant (breast feeding mothers will NOT be excluded)
  • Hospitalisation within 4 weeks of recruitment
  • Vaccination within 4 weeks prior to recruitment
  • Antimicrobial use within 4 weeks of recruitment
  • Participant reports feeling more unwell than usual on the day of enrolment.

EXPLORATORY AIMS- PAEDIATRIC CRITERIA; INCLUSION CRITERIA

  • Age greater than or equal to 2 years and less than 15 years
  • As above for adult participants.

EXPLORATORY AIMS- PAEDIATRIC CRITERIA; EXCLUSION CRITERIA

  • Parent/guardian is unwilling, and/or patient aged 8 to 14 years is unwilling to assent to provide informed consent.
  • As above for adult participants.
Terms in these criteria, in plain language(3)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

Autoimmune disease

A condition in which the immune system attacks the body’s own tissues, such as rheumatoid arthritis, lupus, psoriasis, type 1 diabetes or inflammatory bowel disease.

Immunotherapy studies often leave out active autoimmune disease, and some name exceptions, such as thyroid disease on replacement hormone. Check the exceptions this study lists.

Cancer (malignancy)

Malignancy means cancer. Criteria about another or earlier malignancy ask whether you have had a different cancer, usually within a set number of years.

Some are commonly allowed, such as treated skin cancers other than melanoma and early cancers removed completely — check the exceptions this study lists.

05

Study design

Observational model
Cohort
Time perspective
Prospective
Enrollment
2,000 participants (estimated)
Target follow-up
14 Days
Patient registry
Yes

Groups and cohorts

  • Febrile Adults

    1200 adult participants (15 to 65 years old) with a febrile illness without localising features and reported duration of 3-14 days.

    Diagnostic Test: 5-gene transcription signature

  • Controls

    400 afebrile, healthy adult participants (15 to 65 years old).

    Diagnostic Test: 5-gene transcription signature

  • Febrile Children

    400 child participants (2 to 14 years old) with a febrile illness without localising features and reported duration of 3-14 days. This is an exploratory arm of the study.

    Diagnostic Test: 5-gene transcription signature

Interventions

  • Diagnostic test5-gene transcription signature

    This is a prospective multisite diagnostic evaluation study to assess a novel approach to the diagnosis of enteric fever. The index test of host gene transcription responses by a 5 gene-signature will be compared to the reference test of blood culture confirmation for a diagnosis of enteric fever in patients with AUFI.

06

What researchers measure

Primary outcomes

  1. Sensitivity and specificity (AUROC) of a diagnostic score derived from transcriptional responses by a 5-gene transcription signature (STAT1, SLAMF8, PSME2, WARS, ALDH1A1) in classifying patients with blood culture-confirmed enteric fever.

    Evaluate the performance of a host gene transcription signature for detecting enteric fever in adults presenting with acute undifferentiated fever (AUFI)

    Time frame: 2.5 years

Secondary outcomes

  1. Number of participants with diagnosis confirmed by laboratory testing.

    Determine the frequency of other common causes of AUFI at each site.

    Time frame: 2.5 years

  2. Number of participants presenting with mild, moderate or severe illness by clinical diagnosis according to validated prognostic scores such as sepsis scoring systems.

    Assess the relationship between markers of clinical illness severity, likely infection cause and level of molecular perturbation.

    Time frame: 2.5 years

07

Study locations

1 of 1 sites recruiting
  • Christian Medical Centre
    Vellore, India
    Recruiting
08

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Mar 3, 2025, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
09

Registry details

Key details

Study ID
NCT04878549
Lead sponsor
University of Sheffield
Collaborators
Christian Medical College, Vellore, India, KEMRI-Wellcome Trust Collaborative Research Program
Responsible party
Sponsor
First posted
May 7, 2021
Start date
May 2, 2022
Primary completion
Jun 2025 (estimated)
Completion
Jun 2025 (estimated)
Last update
Mar 3, 2025

Study contacts

Farah Shahi
Contact
f.shahi@sheffield.ac.uk
01142159522
Thomas Darton
Contact
t.darton@sheffield.ac.uk
Thomas Darton
study director · University of Sheffield

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

Interested in this study?

Eligibility is decided by the study team. Share this record with your doctor or contact the team directly.

Contact study team

Follow this study

Get an email when the registry record changes — status, dates, results — or when someone posts here.

Sign in to follow

Discussion

Questions and observations about this study, from anyone following it. Not medical advice, and not a channel to the study team — their contact details are on the registry record.

Sign in to join the discussion. Reading takes no account; posting does. You choose a display name, and a pseudonym is the default.

Nothing here yet. If you are running this trial, taking part in it, or weighing whether to, this is the place to say so.

Start the discussion