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Active, not recruitingNCT07905209Updated Oct 29, 2026

Evaluation of MTHFR and DNMT3B Gene Polymorphisms Along With Periodontal Clinical Parameters in Healthy Individuals and Individuals With Type 2 Diabetes and Periodontitis

An observational study in Periodontitis and Type 2 Diabetes Mellitus (DM), sponsored by Akdeniz University. Active, not recruiting at 1 site in Turkey (Türkiye). Open to participants aged 18 Years and older, including healthy volunteers. Per ClinicalTrials.gov, last updated 2026-10-29.

Sponsored by Akdeniz University · Observational

Updated Oct 29, 2026Newly registeredGo to Updates ↓
Study type
Observational
Model
Case-control
Time perspective
Cross-sectional
Enrollment
200
Ages
18 Years and older
Sex
All
01

Study summary

Periodontitis is a chronic inflammatory disease that affects the tissues supporting the teeth and can lead to progressive tissue destruction. Type 2 diabetes mellitus is a metabolic disease characterized by persistently elevated blood glucose levels. These two conditions are closely related, and genetic factors may influence their development and severity.

This observational study aims to evaluate the distribution of methylenetetrahydrofolate reductase (MTHFR) and DNA methyltransferase 3B (DNMT3B) gene polymorphisms in healthy individuals, individuals with periodontitis, individuals with type 2 diabetes mellitus, and individuals with both conditions. The study also aims to investigate the associations between these genetic variations and periodontal clinical parameters.

The study includes 200 participants divided into four groups of 50 individuals each: healthy individuals, individuals with type 2 diabetes without periodontitis, individuals with periodontitis without type 2 diabetes, and individuals with both type 2 diabetes and periodontitis.

Periodontal examinations include the assessment of plaque index, gingival index, probing pocket depth, clinical attachment loss, and gingival recession. Venous blood samples are collected for molecular analysis of MTHFR and DNMT3B gene polymorphisms.

The findings may contribute to a better understanding of the potential role of genetic factors in periodontal disease and its relationship with type 2 diabetes mellitus.

Read the detailed description

Periodontitis is a multifactorial chronic inflammatory disease characterized by inflammation and progressive destruction of the tooth-supporting tissues. Although microbial dental plaque is the primary etiological factor, the host immune response, environmental factors, and genetic susceptibility play important roles in the initiation and progression of the disease. Variations in disease severity among individuals highlight the potential contribution of genetic factors to periodontal disease pathogenesis.

Diabetes mellitus is a metabolic disease characterized by chronic hyperglycemia. It can impair immune system functions, enhance inflammatory responses, and accelerate periodontal tissue destruction. A bidirectional relationship between periodontitis and diabetes mellitus has been established. While diabetes increases the prevalence and severity of periodontal disease, periodontitis may negatively affect glycemic control by contributing to systemic inflammation. Therefore, both diseases may influence each other through shared pathophysiological mechanisms.

In recent years, increasing attention has been given to the role of genetic and epigenetic mechanisms in the pathogenesis of these diseases. The methylenetetrahydrofolate reductase (MTHFR) gene encodes an enzyme involved in folate metabolism and plays a critical role in the regulation of homocysteine metabolism. Commonly investigated MTHFR polymorphisms, including C677T (rs1801133) and A1298C (rs1801131), may reduce enzyme activity and contribute to elevated homocysteine levels, which have been associated with inflammation, oxidative stress, and vascular dysfunction.

The DNA methyltransferase 3B (DNMT3B) gene encodes an important epigenetic regulator involved in the regulation of gene expression through DNA methylation. The -149 C>T (rs2424913) polymorphism, located in the promoter region of the DNMT3B gene, may influence gene expression and modulate inflammatory responses. Through these mechanisms, this genetic variation may contribute to the pathogenesis of periodontal disease and diabetes mellitus.

Based on these findings, MTHFR and DNMT3B gene polymorphisms may play a role in the development and progression of periodontitis and diabetes mellitus. However, studies evaluating these genetic variations together with periodontal clinical parameters remain limited.

The primary aim of this study is to investigate the distribution of MTHFR and DNMT3B gene polymorphisms among healthy individuals, individuals with periodontitis alone, individuals with type 2 diabetes mellitus alone, and individuals with both type 2 diabetes mellitus and periodontitis. Additionally, the study aims to evaluate the associations between these genetic variations and periodontal clinical parameters, including plaque index, gingival index, probing pocket depth, clinical attachment loss, and gingival recession.

This observational study is conducted at the Department of Periodontology, Faculty of Dentistry, Akdeniz University, Antalya, Türkiye. A total of 200 participants are included in four groups, each consisting of 50 individuals:

  1. Periodontally healthy individuals without type 2 diabetes mellitus (n=50).
  2. Individuals with type 2 diabetes mellitus without periodontitis (n=50).
  3. Individuals with periodontitis without type 2 diabetes mellitus (n=50).
  4. Individuals with both type 2 diabetes mellitus and periodontitis (n=50).

All participants undergo a comprehensive periodontal clinical examination. Periodontal parameters include the plaque index to assess dental plaque accumulation, gingival index to evaluate gingival inflammation, probing pocket depth to determine the depth of periodontal pockets, clinical attachment loss to assess periodontal tissue destruction, and gingival recession to determine the extent of gingival tissue recession.

Venous blood samples are collected from participants, and molecular methods are used to analyze MTHFR and DNMT3B gene polymorphisms. The collected clinical and genetic data will be statistically evaluated to investigate the associations between genetic polymorphisms and periodontal clinical parameters across the four study groups.

The results of this study may provide further insight into the potential contribution of genetic and epigenetic factors to periodontal disease and the relationship between periodontitis and type 2 diabetes mellitus.

02

Conditions studied

  • Periodontitis
  • Type 2 Diabetes Mellitus (DM)

Keywords

  • MTHFR Gene Polymorphism
  • DNMT3B Gene Polymorphism
  • Genetic Suspectibility
  • Periodontal Clinical Parameters
  • DNA Methylation
  • Type 2 Diabetes Mellitus
  • Periodontitis
03

In context

Periodontitis

1,231 studies on the registry are indexed under Periodontitis; 295 are open to participants now.

This study's enrollment of 200 is above the median of 90 across 372 observational studies indexed under Periodontitis.

Browse Periodontitis studies →

Lead sponsor

Akdeniz University is the lead sponsor of 297 studies on the registry; 62 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years and older
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

The study population consists of 200 adults recruited from the Department of Periodontology, Faculty of Dentistry, Akdeniz University, Antalya, Türkiye. Participants are divided into four groups of 50 individuals each: systemically and periodontally healthy controls, individuals with type 2 diabetes mellitus without periodontitis, individuals with periodontitis without type 2 diabetes mellitus, and individuals with both type 2 diabetes mellitus and periodontitis. Periodontal clinical parameters are recorded, and venous blood samples are collected for the analysis of MTHFR and DNMT3B gene polymorphisms.

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  1. Being a non-smoker.
  2. Having received no periodontal treatment within the last 6 months.
  3. Having no systemic disease known to affect periodontal health other than diabetes mellitus (e.g., hypertension, cardiovascular diseases).
  4. Having no infectious diseases such as tuberculosis, hepatitis, or AIDS.
  5. Being 18 years of age or older.
  6. Not being pregnant (for female participants).

Exclusion criteria

Exclusion Criteria:

  1. Current smokers.
  2. Individuals who have received periodontal treatment within the last 6 months.
  3. Individuals with systemic diseases known to affect periodontal health other than diabetes mellitus (e.g., hypertension, cardiovascular diseases).
  4. Individuals with infectious diseases such as tuberculosis, hepatitis, or AIDS.
  5. Individuals under 18 years of age.
  6. Pregnant women.
  7. Individuals who refuse to participate in the study or do not provide .
Terms in these criteria, in plain language(1)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

05

Study design

Observational model
Case-control
Time perspective
Cross-sectional
Enrollment
200 participants (actual)
Patient registry
No

Groups and cohorts

  • Healthy Control Group

    This group consists of 50 systemically and periodontally healthy individuals without type 2 diabetes mellitus or periodontitis. Periodontal clinical parameters are evaluated, and venous blood samples are collected for the analysis of MTHFR and DNMT3B gene polymorphisms.

    Diagnostic Test: MTHFR and DNMT3B Genetic Polymorphism Analysis

  • Type 2 Diabetes Mellitus Group

    This group consists of 50 individuals diagnosed with type 2 diabetes mellitus without periodontitis. Periodontal clinical parameters are evaluated, and venous blood samples are collected for the analysis of MTHFR and DNMT3B gene polymorphisms.

    Diagnostic Test: MTHFR and DNMT3B Genetic Polymorphism Analysis

  • Periodontitis Group

    This group consists of 50 individuals diagnosed with periodontitis without type 2 diabetes mellitus. Periodontal clinical parameters are evaluated, and venous blood samples are collected for the analysis of MTHFR and DNMT3B gene polymorphisms.

    Diagnostic Test: MTHFR and DNMT3B Genetic Polymorphism Analysis

  • Type 2 Diabetes and Periodontitis Group

    This group consists of 50 individuals diagnosed with both type 2 diabetes mellitus and periodontitis. Periodontal clinical parameters are evaluated, and venous blood samples are collected for the analysis of MTHFR and DNMT3B gene polymorphisms.

    Diagnostic Test: MTHFR and DNMT3B Genetic Polymorphism Analysis

Interventions

  • Diagnostic testMTHFR and DNMT3B Genetic Polymorphism Analysis

    Venous blood samples are collected from participants in all four study groups. DNA extracted from these samples is analyzed to identify MTHFR (C677T and A1298C) and DNMT3B (-149 C\>T) gene polymorphisms. The genetic findings will be evaluated in relation to periodontal clinical parameters and the presence of type 2 diabetes mellitus and periodontitis. No therapeutic intervention is administered as part of this observational study.

06

What researchers measure

Primary outcomes

  1. MTHFR C677T (rs1801133) Genotype Distribution

    The distribution of MTHFR C677T (rs1801133) genotypes (CC, CT, and TT) will be determined using DNA extracted from venous blood samples. Genotype frequencies will be compared among the four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both conditions.

    Time frame: At baseline (single blood sample collection)

  2. MTHFR A1298C (rs1801131) Genotype Distribution

    The distribution of MTHFR A1298C (rs1801131) genotypes (AA, AC, and CC) will be determined using DNA extracted from venous blood samples. Genotype frequencies will be compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single blood sample collection)

  3. DNMT3B -149C>T (rs2424913) Genotype Distribution

    The distribution of DNMT3B -149C\>T (rs2424913) genotypes (CC, CT, and TT) will be determined using DNA extracted from venous blood samples. Genotype frequencies will be compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single blood sample collection)

Secondary outcomes

  1. Plaque Index (PI) Score

    Plaque accumulation will be assessed using the Plaque Index (PI). The PI score will be recorded during the baseline periodontal examination and compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single periodontal examination)

  2. Gingival Index (GI) Score

    Gingival inflammation will be assessed using the Gingival Index (GI). The GI score will be recorded during the baseline periodontal examination and compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single periodontal examination)

  3. Probing Pocket Depth (PPD)

    Probing Pocket Depth (PPD) will be measured in millimeters (mm) using a periodontal probe during the baseline periodontal examination. PPD values will be compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single periodontal examination)

  4. Clinical Attachment Loss (CAL)

    Clinical Attachment Loss (CAL) will be measured in millimeters (mm) as the distance from the cementoenamel junction to the base of the periodontal pocket using a periodontal probe. CAL values will be recorded during the baseline periodontal examination and compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single periodontal examination)

  5. Gingival Recession (GR)

    Gingival Recession (GR) will be measured in millimeters (mm) as the distance from the cementoenamel junction to the gingival margin using a periodontal probe. GR values will be recorded during the baseline periodontal examination and compared among four study groups: healthy individuals, individuals with type 2 diabetes mellitus only, individuals with periodontitis only, and individuals with both type 2 diabetes mellitus and periodontitis.

    Time frame: At baseline (single periodontal examination)

07

Study locations

1 site
08

References and documents

Publications

  • Kocaman G, Orbak R. Investigation of the Methylenetetrahydrofolate Reductase Gene C677T and A1298G Polymorphism in Chronic Periodontitis. J Clin Pract Res. 2019;41(3):250-254. doi:10.14744/etd.2019.39259.
  • Meng Y, Liu X, Ma K, Zhang L, Lu M, Zhao M, Guan MX, Qin G. Association of MTHFR C677T polymorphism and type 2 diabetes mellitus (T2DM) susceptibility. Mol Genet Genomic Med. 2019 Dec;7(12):e1020. doi: 10.1002/mgg3.1020. Epub 2019 Oct 30. PubMed 31663297 ↗
  • Dias LNDS, Coelho MC, Persuhn DC, Ribeiro ILA, Freire EAM, Oliveira NFP, Aquino SG. DNMT3B (rs2424913) polymorphism is associated with systemic lupus erythematosus alone and with co-existing periodontitis in a Brazilian population. J Appl Oral Sci. 2022 Apr 29;30:e20210567. doi: 10.1590/1678-7757-2021-0567. eCollection 2022. PubMed 35507987 ↗
  • Coelho MC, Queiroz IC, Viana Filho JMC, Aquino SG, Persuhn DC, Oliveira NFP. miR-9-1 gene methylation and DNMT3B (rs2424913) polymorphism may contribute to periodontitis. J Appl Oral Sci. 2020 Apr 3;28:e20190583. doi: 10.1590/1678-7757-2019-0583. eCollection 2020. PubMed 32267380 ↗

Individual participant data

Plan to share: No — Individual participant data (IPD) will not be shared with other researchers due to participant confidentiality and the sensitive nature of genetic and clinical health information. The collected data will be used exclusively for the purposes of the approved research study. Study findings will be reported in aggregate form without disclosing individual participant information.

09

Timeline

1 registry update since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reached

Ran from Apr 2026 to primary completion in Aug 2026, 4 months.

How these figures are worked out, and which studies are left out of them.

Registered
Oct 20, 2026
First posted
Oct 29, 2026
StartActual
Apr 2, 2026
Primary completionActual
Aug 2, 2026
CompletionEst.
Dec 2, 2026
Last update
Oct 29, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
Registered
First appeared on the registry. No changes since
Oct 29, 2026
Show all 1 update
  1. Oct 29, 2026
    First appeared on the registry

From the registry record's own update history. This site started tracking changes on Sep 25, 2026; for anything earlier, see the record history on ClinicalTrials.gov ↗

10

Registry details

Key details

Study ID
NCT07905209
Lead sponsor
Akdeniz University
Responsible party
Sponsor
First posted
Oct 29, 2026
Start date
Apr 2, 2026
Primary completion
Aug 2, 2026
Completion
Dec 2, 2026 (estimated)
Last update
Oct 29, 2026

Study contacts

Nezahat Arzu Kayar, DDS, PhD
principal investigator · Akdeniz University, Faculty of Dentistry, Department of Periodontology

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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