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RecruitingNCT06715046Updated Dec 4, 2024

Cell Free DNA Profiling As a Tool to Monitor Clinically-Relevant Events in Allogeneic Hematopoietic Stem Cell Transplantation

An observational study in GVHD - Graft-Versus-Host Disease, Infections After HSCT and Transplant Associated Microangiopathy TAM, sponsored by University of Turin, Italy. Recruiting at 2 sites in Italy. Open to participants aged 18 Years and older. Per ClinicalTrials.gov, last updated 2024-12-04.

Sponsored by University of Turin, Italy · Observational

From the registry’s dates

  • Started Jan 2024; still recruiting 2 years 8 months later.
Study type
Observational
Model
Cohort
Time perspective
Prospective
Enrollment
30
Ages
18 Years and older
Sex
All
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Study summary

Allogeneic hematopoietic stem cell transplantation (HSCT) is a life-saving treatment for people with severe blood-related diseases. However, it comes with serious risks, including a condition called graft-versus-host disease (GVHD), where the transplanted cells attack the patient's body. GVHD can occur in about 50% of patients acutely and 35% in a chronic form, potentially affecting organs like the skin, liver, and gastrointestinal system. Currently, doctors diagnose GVHD based on symptoms, as there are no easy tests available.

Infections can also be a problem after HSCT, as dormant viruses may reactivate. These infections are monitored using specialized tests. Additionally, doctors use advanced methods, like analyzing minimal residual disease (MRD) and chimerism, to check for the risk of the original disease coming back. MRD is tracked by looking for specific genetic markers of the disease in the patient's blood or bone marrow.

Another emerging tool involves analyzing cell-free DNA (cfDNA)-tiny fragments of DNA found in bodily fluids that come from dying cells. This technique, called liquid biopsy, has been revolutionary in areas like cancer detection, pregnancy testing, and organ transplants. For example, in organ transplants, cfDNA can indicate early signs of rejection, helping reduce the need for invasive biopsies.

In HSCT, the use of cfDNA to monitor complications like GVHD or relapse has not been fully explored. This pilot study aims to investigate whether analyzing cfDNA using a technique called epigenomic profiling can help detect acute GVHD, as well as other post-transplant issues like infections, disease relapse, and chronic GVHD. The goal is to compare cfDNA analysis to current testing methods to see if it offers better or earlier detection of complications.

This research could pave the way for improved, less invasive monitoring of HSCT patients, potentially leading to better outcomes and fewer complications.

02

Conditions studied

  • GVHD - Graft-Versus-Host Disease
  • Infections After HSCT
  • Transplant Associated Microangiopathy TAM
  • Sinusoidal Obstruction Syndrome (SOS)
  • HSCT Engraftment

Keywords

  • cfDNA
  • methylation
  • epigenetic profile
  • HSCT
  • liquid biopsy
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In context

Hepatic Veno-Occlusive Disease

23 studies on the registry are indexed under Hepatic Veno-Occlusive Disease; 3 are open to participants now.

Browse Hepatic Veno-Occlusive Disease studies →

Lead sponsor

University of Turin, Italy is the lead sponsor of 206 studies on the registry; 34 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years and older
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Non-probability sample

Study population

Patients will be enrolled at the Unità di Ematologia e Trapianto di Midollo Osseo e Oncoematologia of the San Raffaele Hospital in Milan and at the SS Trapianto allogenico e terapie cellulari, SC Ematologia U of the Città della Salute e della Scienza Hospital in Turin.

Inclusion criteria

  • Patient must be affected by an hematological malignancy requiring hematopoietic stem cell transplantation (HSCT).

Exclusion criteria

Exclusion Criteria:

  • Patients can not be 17 years old or yunger
05

Study design

Observational model
Cohort
Time perspective
Prospective
Enrollment
30 participants (estimated)
Patient registry
No
Biospecimen retention
Samples with dna

Groups and cohorts

  • GVHD patients

    This group gathers all the patients that eventually develop GVHD

    Diagnostic Test: Sample collation for cfDNA methylation analysis · Diagnostic Test: Sample collection for EV phenotype analysis

  • Control patients

    This group gathers all the patients that will not develop post-HSCT complications and show no signs of relapse.

    Diagnostic Test: Sample collation for cfDNA methylation analysis · Diagnostic Test: Sample collection for EV phenotype analysis

  • Infection patients

    This group gathers all the patients that develop post-HSCT infections

    Diagnostic Test: Sample collation for cfDNA methylation analysis · Diagnostic Test: Sample collection for EV phenotype analysis

  • Relapse patients

    This group gathers all the patients that relapse after HSCT

    Diagnostic Test: Sample collation for cfDNA methylation analysis · Diagnostic Test: Sample collection for EV phenotype analysis

  • TAD/SOS patients

    This goup gathers patients presenting with transplant associated microangiopathy or sinusoidal obstruction.

Interventions

  • Diagnostic testSample collation for cfDNA methylation analysis

    Sample collation for cfDNA methylation analysis

  • Diagnostic testSample collection for EV phenotype analysis

    Analysis of the EV phenotype to evaluate their potential value as markers for GVHD, relapse and engraftment.

06

What researchers measure

Primary outcomes

  1. Epigenetic profiling of cfDNA in patients developing GVHD

    Analysis of cfDNA methylation patterns in GVHD patients vs controls to define potential marker regions to be translationally utilized for early detections of the disease.

    Time frame: From enrollment to the end of post-HSCT follow-up of 12 months

Secondary outcomes

  1. Epigenetic profiling of cfDNA in patients developing post-HSCT infections

    Analysis of cfDNA methylation patterns in patients developing post-HSCT transplantation infections vs controls to define potential marker regions to be translationally utilized for early detections of the condition.

    Time frame: From enrollment to the end of post-HSCT follow-up of 12 months

  2. Epigenetic profiling of cfDNA in patients with engraftment failure

    Analysis of cfDNA methylation patterns in patients with engraftment failure vs controls.

    Time frame: From enrollment to the end of post-HSCT follow-up of 12 months

  3. Epigenetic profiling of cfDNA in relapsing patients

    Description: Analysis of cfDNA methylation patterns in relapsing patients vs controls.

    Time frame: From enrollment to the end of post-HSCT follow-up of 12 months

  4. Epigenetic profiling of cfDNA in patients developing transplant associated microangiopathy or sinusoidal obstruction

    Time frame: From enrollment to the end of post-HSCT follow-up of 12 months

  5. Evaluation of EV phenotype

    Evaluation of circulating vesicle phenotype in as potential biomarker for GVHD, engraftment and relapse.

    Time frame: From enrollment to the end of post-HSCT follow-up of 12 months

07

Study locations

2 of 2 sites recruiting
  • Unità di Ematologia e Trapianto di Midollo Osseo e Oncoematologia of the San Raffaele Hospital in Milan
    Milan, 10132, Italy
    Recruiting
  • SS Trapianto allogenico e terapie cellulari, SC Ematologia U of the Città della Salute e della Scienza Hospital
    Turin, 10126, Italy
    Recruiting
08

References and documents

Publications

  • Wang X, He B. Insight into endothelial cell-derived extracellular vesicles in cardiovascular disease: Molecular mechanisms and clinical implications. Pharmacol Res. 2024 Sep;207:107309. doi: 10.1016/j.phrs.2024.107309. Epub 2024 Jul 14. PubMed 39009292 ↗
  • Jodele S, Dandoy CE, Sabulski A, Koo J, Lane A, Myers KC, Wallace G, Chima RS, Teusink-Cross A, Hirsch R, Ryan TD, Benoit S, Davies SM. Transplantation-Associated Thrombotic Microangiopathy Risk Stratification: Is There a Window of Opportunity to Improve Outcomes? Transplant Cell Ther. 2022 Jul;28(7):392.e1-392.e9. doi: 10.1016/j.jtct.2022.04.019. Epub 2022 Apr 29. PubMed 35490975 ↗
  • Avni B, Neiman D, Shaked E, Gal-Rosenberg O, Grisariu S, Kuzli M, Avni I, Fracchia A, Stepensky P, Zuckerman T, Lev-Sagie A, Fox-Fisher I, Piyanzin S, Moss J, Salpeter SJ, Glaser B, Shemer R, Dor Y. Chronic graft-versus-host disease detected by tissue-specific cell-free DNA methylation biomarkers. J Clin Invest. 2024 Jan 16;134(2):e163541. doi: 10.1172/JCI163541. PubMed 37971879 ↗
  • Oellerich M, Budde K, Osmanodja B, Bornemann-Kolatzki K, Beck J, Schutz E, Walson PD. Donor-derived cell-free DNA as a diagnostic tool in transplantation. Front Genet. 2022 Oct 21;13:1031894. doi: 10.3389/fgene.2022.1031894. eCollection 2022. PubMed 36339004 ↗
  • Cheng AP, Cheng MP, Loy CJ, Lenz JS, Chen K, Smalling S, Burnham P, Timblin KM, Orejas JL, Silverman E, Polak P, Marty FM, Ritz J, De Vlaminck I. Cell-free DNA profiling informs all major complications of hematopoietic cell transplantation. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2113476118. doi: 10.1073/pnas.2113476118. PubMed 35058359 ↗

Individual participant data

Plan to share: Undecided

09

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Dec 4, 2024, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT06715046
Lead sponsor
University of Turin, Italy
Collaborators
San Raffaele IRCCS Hospital, Università Vita â€" Salute, (Milan, Italy)
Responsible party
Silvia Deaglio (Professor of Medical Genetics, University of Turin, Italy) — Principal investigator
First posted
Dec 4, 2024
Start date
Jan 31, 2024
Primary completion
Dec 31, 2026 (estimated)
Completion
Dec 31, 2026 (estimated)
Last update
Dec 4, 2024

Study contacts

Silvia Deaglio, MD/PhD
Contact
silvia.deaglio@unito.it
+39 0116709535

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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