ClinicalTrials.gg
TerminatedNCT01596699Updated Feb 26, 2020Results posted

Pilot Trial of Clofarabine Added to Standard Busulfan and Fludarabine for Conditioning Prior to Allogeneic Hematopoietic Cell Transplantation

A Phase 2 interventional study of Alemtuzumab and Busulfan in Myeloid Malignancy, Bone Marrow Failure Syndrome and Transfusion-dependent Red Blood Cell (RBC) Defect, sponsored by University of California, San Francisco. Terminated at 1 site in United States. Open to participants aged 3 Months to 30 Years. Per ClinicalTrials.gov, last updated 2020-02-26.

Sponsored by University of California, San Francisco · Phase 2, Interventional, and Treatment

Why this study was terminated
Triggering of futility rule; Interim analysis suggested no statistical superiority over historic controls
Phase
Phase 2
Study type
Interventional
Enrollment
16
Allocation
Non-randomized
Ages
3 Months to 30 Years
Sex
All
01

Study summary

The purpose of this study is to find out what effects, good and/or bad, the addition of clofarabine, a new chemotherapy agent, to a standard busulfan and fludarabine conditioning treatment has. The study will also look at what causes some people to have high drug levels of these medications in their body compared to other people that may have low drug levels even if they all receive the same dose of medication.

02

Conditions studied

  • Myeloid Malignancy
  • Bone Marrow Failure Syndrome
  • Transfusion-dependent Red Blood Cell (RBC) Defect
  • Congenital Immunodeficiency
  • Metabolic Disease
  • Severe Immune Dysregulation

Keywords

  • conditioning
  • allogeneic
  • hematopoietic
  • cell
  • transplantation
  • HCT
03

In context

Bone Marrow Failure Disorders

91 studies on the registry are indexed under Bone Marrow Failure Disorders; 29 are open to participants now.

This study's enrollment of 16 is below the median of 26 across 69 interventional studies indexed under Bone Marrow Failure Disorders.

Browse Bone Marrow Failure Disorders studies →

Lead sponsor

University of California, San Francisco is the lead sponsor of 2,169 studies on the registry; 372 are open to participants now.

Of its 267 completed or terminated interventional studies of FDA-regulated products, 202 (76%) have results posted.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
3 Months to 30 Years
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Patients must be ≥ 3 months and ≤30 years of age.
  • Stratum A: Non-Malignant Diseases, including:

    • Bone Marrow Failure Syndromes
    • Hemoglobinopathies or transfusion-dependent red blood cell (RBC) defects
    • Congenital Immunodeficiencies
    • Metabolic Diseases known to be treatable with Hematopoietic cell transplantation (HCT) (e.g. Hurler's)
    • Other Bone Marrow Stem Cell Defects (e.g. Osteopetrosis)
    • Severe Immune Dysregulation / Syndromes with at least transient prior response to therapy
  • Stratum B: Myeloid , including:

    • acute myeloid leukemia (AML), in greater than first clinical remission, or in CR1 but with detectable disease (≥0.1% Blasts by minimal residual disease (MRD) or Flow, or Positive Cytogenetics), or in CR1 but with a matched sibling Umbilical cord blood (UCB) donor.
    • Myelodysplastic syndromes (MDS)
    • Juvenile myelomonocytic leukemia (JMML)
    • Chronic myeloid leukemia (CML), with detectable disease by polymerase chain reaction (PCR)
  • Patients must have a suitable donor based on the University of California, San Francisco (UCSF) Pediatric Bone Marrow Transplant (BMT) standard operating procedures (SOP). 10/10 (HLA-A, -B, -C, -DR, -DQ) matching will be done for related and adult unrelated donors; 8/8 (HLA-A, -B, -C, -DR) for umbilical cord blood donors. Patients with non-malignant diseases will generally be eligible only if they have a mismatched donor, or an accepted clinical reason to be considered high-risk for rejection.
  • Liver transaminases ( (AST)/alanine aminotransferase (ALT)) and Direct less than twice the within 2 weeks of admission.
  • Cardiac Shortening Fraction ≥27% within 4 weeks of admission.
  • by Schwartz formula, (GFR) or 24 hr urine collection ≥50 cc/min/1.73 m2, within 4 weeks of admission.
  • Pulmonary diffusion capacity ≥50% of predicted corrected for anemia/lung volume within 4 weeks of admission. If unable to do Pulmonary function testing(PFTs), then no active lung disease by chest x-ray (CXR) and/or oxygen (O2) Saturation ≥90% on room air.

Exclusion criteria

Exclusion Criteria:

  • Fanconi Anemia
  • Dyskeratosis Congenita
  • A known syndrome with increased sensitivity to radiation or alkylating agents
  • Severe Combined Immunodeficiency Disease eligible for a non-myeloablative HCT Trial
  • A mismatched donor for whom ex vivo T-cell depletion of the donor stem cells is planned
Terms in these criteria, in plain language(8)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Autoimmune disease

A condition in which the immune system attacks the body’s own tissues, such as rheumatoid arthritis, lupus, psoriasis, type 1 diabetes or inflammatory bowel disease.

Immunotherapy studies often leave out active autoimmune disease, and some name exceptions, such as thyroid disease on replacement hormone. Check the exceptions this study lists.

Immunosuppression

A weakened immune system. It can come from an illness, such as HIV or some blood cancers, or from medicines that turn the immune system down, for example after an organ transplant or for an autoimmune disease; steroids at higher doses count.

Read whether the line is about a condition or about medicines, and which medicines and doses it means.

Cancer (malignancy)

Malignancy means cancer. Criteria about another or earlier malignancy ask whether you have had a different cancer, usually within a set number of years.

Some are commonly allowed, such as treated skin cancers other than melanoma and early cancers removed completely — check the exceptions this study lists.

ALT and AST (liver enzymes)

Two enzymes measured in a routine blood test of the liver. Higher levels can mean the liver is under strain or damaged. SGPT and SGOT are older names for ALT and AST.

Criteria usually give a limit as a multiple of the upper limit of normal (ULN), often higher when cancer has spread to the liver.

Bilirubin

A yellow substance made when red blood cells are broken down, which the liver clears. A high level can mean a problem with the liver or the bile ducts.

Criteria often allow more for people with Gilbert’s syndrome, a harmless inherited condition that raises bilirubin.

ULN (upper limit of normal)

The top of the normal range for a blood test, as set by the laboratory that runs it. Each lab prints its own range next to your result.

“≤ 2.5 × ULN” means the result can be up to two and a half times that top value.

Creatinine clearance (CrCl)

How quickly the kidneys clear creatinine, a waste product, from the blood. A study may estimate it from a blood test with age, weight and sex (often by the Cockcroft–Gault formula), or measure it using blood and urine collected over a set time. Given in mL/min; higher is better.

GFR and eGFR (kidney filtering)

GFR (glomerular filtration rate) is how much blood the kidneys filter each minute. It is usually estimated from a blood test — eGFR, by formulas such as CKD-EPI or MDRD — and some studies ask for it to be measured directly instead. Usually given in mL/min/1.73 m².

Check the method, the units and the minimum the study states. A value of 90 or above is in the normal-or-high range, but kidney damage can show in other tests too.

05

Study design

Phase
Phase 2
Primary purpose
Treatment
Allocation
Non-randomized
Intervention model
Single group
Masking
None (open label)
Enrollment
16 participants (actual)

Study arms

  • Experimental
    Patients with Myeloid Malignancies

    Drug: Busulfan · Drug: Fludarabine · Drug: Clofarabine

  • Experimental
    Patients with Non-Malignancies

    Drug: Alemtuzumab · Drug: Busulfan · Drug: Fludarabine · Drug: Clofarabine

Interventions

  • 0.5 mg/kg (max 15 mg or max 6 mg), IV, Day -12 to Day -10 pre-HCT

    Also known as: Campath

  • 0.8 mg/kg/dose q6hrs or 1.1 mg/kg/dose q6hrs, IV, Day -9 to Day -6 pre-HCT

    Also known as: Busulfex

  • 40 mg/m2 or 1.33 mg/kg, IV, Day -5 to Day -2 pre-HCT

    Also known as: Fludara

  • 10 mg/m2 or 0.33 mg/kg, IV, Day -5 to Day -2 pre-HCT

    Also known as: Clolar

06

What researchers measure

Primary outcomes

  1. Number of Participants With Treatment-Related Adverse Events as a Measure of Safety and Tolerability

    Severe Toxicity will be defined as death or Grade IV by NCI Common Terminology Criteria for Adverse Events (CTCAE) version 4.0 pulmonary or hepatic failure (including moderate veno-occlusive disease(VOD) related to the transplant conditioning regimen within 100 days post-HCT. VOD will be defined by standard criteria. Patients must have Bilirubin \>2.0 plus Hepatomegaly and/or Right upper quadrant (RUQ) pain plus Weight gain \>5%.

    Time frame: Up to 5 years on average

Secondary outcomes

  1. Engraftment Rate of Patients With Non-malignant Diseases (Stratum A)

    Engraftment will be defined as the development of an Absolute Neutrophil Count (ANC) \>500 for 3 consecutive days plus donor CD14/15 cells \>70%. The engraftment rate in the population used for historical control is 40%. If 3 patients in Stratum A experience graft rejection, this stratum will close early for failing to achieve superior engraftment compared to standard-of-care.

    Time frame: Participants will have engraftment blood studies starting approximately Day 30 post hematopoietic stem cell transplant and then monthly until stable. Average study participation is approximately 5 years.

  2. Mixed-donor Chimerism Rate of Patients With High-risk Myeloid Malignancies (Stratum B)

    Full-donor chimerism will be defined by as ≥99% donor cells by Short Tandem Repeat (STR) analysis in all cell lines (CD3, CD14/15, and CD19) in peripheral blood. The historic control for Stratum B was determined using the 20 patients who were transplanted from 2005 - 2010 with Busulfan (BU)-based regimens and who retrospectively would have been eligible for the current trial. Of these 20 patients, at 100 days post-HCT, only 8 (40%) patients had full-donor chimerism. If 5 patients in Stratum B experienced mixed-donor chimerism at Day 100, we will close this stratum early for failing to achieve superior donor cell engraftment compared to standard-of-care.

    Time frame: Participants will have peripheral blood chimerism assessed at Day 100 post hematopoietic stem cell transplant and then monthly until stable.

  3. Serum Concentrations and Potential for Drug-drug Interaction of Fludarabine and Clofarabine

    Fludarabine and clofarabine drug levels and potential covariates influencing drug exposure such as renal function and genetic variants involved in drug metabolism, distribution, and activation will be analyzed using standard population pharmacokinetic methods using non-linear mixed effects modeling (NONMEM) software

    Time frame: Pharmacokinetics (PK) blood sampling Days -5 to -2 pre-hematopoietic stem cell transplant.

07

Results

Posted Feb 26, 2020
Limitations and caveats
Study closed prior to completion. Interim analysis suggested treatments would not demonstrate statistical superiority over historic controls.

Participant flow

Participant flow — Overall Study
MilestoneStratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid Malignancies
Started106
Completed106
Not completed00

Outcome measures

PrimaryNumber of Participants With Treatment-Related Adverse Events as a Measure of Safety and Tolerability

Severe Toxicity will be defined as death or Grade IV by NCI Common Terminology Criteria for Adverse Events (CTCAE) version 4.0 pulmonary or hepatic failure (including moderate veno-occlusive disease(VOD) related to the transplant conditioning regimen within 100 days post-HCT. VOD will be defined by standard criteria. Patients must have Bilirubin \>2.0 plus Hepatomegaly and/or Right upper quadrant (RUQ) pain plus Weight gain \>5%.

Time frame:
Up to 5 years on average
Reported as:
Number · participants
Number of Participants With Treatment-Related Adverse Events as a Measure of Safety and Tolerability
participantsStratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid Malignancies
Death10
Veno-occlusive disease(VOD)11
SecondaryEngraftment Rate of Patients With Non-malignant Diseases (Stratum A)

Engraftment will be defined as the development of an Absolute Neutrophil Count (ANC) \>500 for 3 consecutive days plus donor CD14/15 cells \>70%. The engraftment rate in the population used for historical control is 40%. If 3 patients in Stratum A experience graft rejection, this stratum will close early for failing to achieve superior engraftment compared to standard-of-care.

Time frame:
Participants will have engraftment blood studies starting approximately Day 30 post hematopoietic stem cell transplant and then monthly until stable. Average study participation is approximately 5 years.
Reported as:
Number · percentage of participants
Engraftment Rate of Patients With Non-malignant Diseases (Stratum A)
percentage of participantsStratum A: Patients With Non-Malignancies
Engraftment Rate of Patients With Non-malignant Diseases (Stratum A)66.67
SecondaryMixed-donor Chimerism Rate of Patients With High-risk Myeloid Malignancies (Stratum B)

Full-donor chimerism will be defined by as ≥99% donor cells by Short Tandem Repeat (STR) analysis in all cell lines (CD3, CD14/15, and CD19) in peripheral blood. The historic control for Stratum B was determined using the 20 patients who were transplanted from 2005 - 2010 with Busulfan (BU)-based regimens and who retrospectively would have been eligible for the current trial. Of these 20 patients, at 100 days post-HCT, only 8 (40%) patients had full-donor chimerism. If 5 patients in Stratum B experienced mixed-donor chimerism at Day 100, we will close this stratum early for failing to achieve superior donor cell engraftment compared to standard-of-care.

Time frame:
Participants will have peripheral blood chimerism assessed at Day 100 post hematopoietic stem cell transplant and then monthly until stable.
Reported as:
Number · percentage of participants
Mixed-donor Chimerism Rate of Patients With High-risk Myeloid Malignancies (Stratum B)
percentage of participantsStratum B: Patients With Myeloid Malignancies
Mixed-donor Chimerism Rate of Patients With High-risk Myeloid Malignancies (Stratum B)66.67
SecondarySerum Concentrations and Potential for Drug-drug Interaction of Fludarabine and Clofarabine

Fludarabine and clofarabine drug levels and potential covariates influencing drug exposure such as renal function and genetic variants involved in drug metabolism, distribution, and activation will be analyzed using standard population pharmacokinetic methods using non-linear mixed effects modeling (NONMEM) software

Time frame:
Pharmacokinetics (PK) blood sampling Days -5 to -2 pre-hematopoietic stem cell transplant.

No measurements were reported for this outcome.

Adverse events

Collected over Up to 5 years. Non-serious events are listed at a 5% frequency threshold.

Adverse event summary by group
GroupDeathsSeriousOther
Stratum A: Patients With Non-Malignancies1/10 (10%)1/10 (10%)10/10 (100%)
Stratum B: Patients With Myeloid Malignancies6/6 (100%)1/6 (16.7%)6/6 (100%)
Most frequent serious events
Most frequent serious events
EventStratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid Malignancies
Veno-occlusive disease (VOD)General disorders1/101/6
Most frequent other events
Most frequent other events
EventStratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid Malignancies
Febrile neutropeniaBlood and lymphatic system disorders10/106/6
AnemiaBlood and lymphatic system disorders10/106/6
Mucositis oralGastrointestinal disorders10/106/6
Lung InfectionInfections and infestations0/101/6
Lymph Gland InfectionInfections and infestations0/101/6
StridorRespiratory, thoracic and mediastinal disorders1/100/6

Baseline characteristics

Age, Customized
Age, Customized(Participants)Stratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid MalignanciesTotal
0-9 years old10616
Sex: Female, Male
Sex: Female, Male(Participants)Stratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid MalignanciesTotal
Female404
Male6612
Ethnicity (NIH/OMB)
Ethnicity (NIH/OMB)(Participants)Stratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid MalignanciesTotal
Hispanic or Latino404
Not Hispanic or Latino6612
Unknown or Not Reported000
Race (NIH/OMB)
Race (NIH/OMB)(Participants)Stratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid MalignanciesTotal
American Indian or Alaska Native000
Asian224
Native Hawaiian or Other Pacific Islander000
Black or African American011
White7310
More than one race000
Unknown or Not Reported101
Region of Enrollment
Region of Enrollment(participants)Stratum A: Patients With Non-MalignanciesStratum B: Patients With Myeloid MalignanciesTotal
United States10616
08

Study locations

1 site
  • University of California, San Francisco
    San Francisco, California 94143, United States
09

References and documents

Study documents

PDFs hosted by the registry, ClinicalTrials.gov.

Individual participant data

Plan to share: No

10

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Feb 26, 2020, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
11

Registry details

Key details

Study ID
NCT01596699
Responsible party
Sponsor
First posted
May 11, 2012
Start date
May 24, 2012
Primary completion
Jun 2019
Completion
Jun 2019
Results posted
Feb 26, 2020
Last update
Feb 26, 2020

Study contacts

Christopher C Dvorak, MD
principal investigator · University of California, San Francisco

Oversight

Data monitoring committee
Yes
FDA-regulated drug
Yes
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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Studies of the drugs tested here: Busulfan · Fludarabine · Clofarabine

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