ClinicalTrials.gg
CompletedNCT01462448Updated Aug 12, 2025

Study to Identify the Genetic Variations Associated With Phantom Limb Pain

An observational study in Phantom Limb, sponsored by Henry M. Jackson Foundation for the Advancement of Military Medicine. Completed at 1 site in United States. Open to participants aged 18 Years and older, including healthy volunteers. Per ClinicalTrials.gov, last updated 2025-08-12.

Sponsored by Henry M. Jackson Foundation for the Advancement of Military Medicine · Observational

Study type
Observational
Model
Case-control
Time perspective
Cross-sectional
Enrollment
726
Ages
18 Years and older
Sex
All
01

Study summary

The purpose of this study is to determine if there is a genetic component to phantom limb pain. DNA will be analyzed for single nucleotide polymorphisms (SNPs) between the control and phantom limb pain group. Total RNA will also be isolated and profiled to asses the degree to which our gene(s) of interest are expressed in the presence or absence of phantom limb pain. Some proteins, such as inflammatory antibodies or the neurotrophin brain-derived neurotrophic factor (BDNF), will also be assessed for their association(s) with phantom limb pain.

Read the detailed description

Most patients (90-95%)with major limb amputations experience a phantom limb--the vivid impression that the limb is still present. In many cases, the sensation is painful for reasons that are currently not well understood. A small subset of amputees (\<10%) never experience phantom limb pain (PLP), the painful sensation felt in the amputated limb. This difference suggests that there may be a genetic component that precludes some patients from ever experiencing PLP. Understanding the genetic components of PLP may help in predicting which patients will experience PLP and which amputees will respond to the various treatment options available.

In order to understand the genetic aspects and ultimately develop more effective treatment options in the future, patients with and without PLP will be asked to give 30 mls of blood after overnight fasting. These blood samples will be de-identified and sent to the National Institutes of Health (NIH) in Bethesda, Maryland, where all of the genetic analyses will take place.

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Conditions studied

  • Phantom Limb

Keywords

  • Phantom Limb
  • Genetic Variation
  • DNA Sequence Analysis
  • Amputation, Traumatic
  • Single Nucleotide Polymorphism
  • Visual Analog Pain Scale
  • Brain-Derived Neurotrophic Factor
  • Inflammatory Antibody
  • Peripheral Nerve Damage
03

In context

Phantom Limb

163 studies on the registry are indexed under Phantom Limb; 35 are open to participants now.

This study's enrollment of 726 is above the median of 67 across 25 observational studies indexed under Phantom Limb.

Browse Phantom Limb studies →

Lead sponsor

Henry M. Jackson Foundation for the Advancement of Military Medicine is the lead sponsor of 86 studies on the registry; 18 are open to participants now.

Of its 7 completed or terminated interventional studies of FDA-regulated products, 2 (29%) have results posted.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years and older
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

Subjects to be recruited at WRNMMC will be military health care beneficiaries age 18 and older who have sustained one or more amputations.

Eligibility criteria

Chronic PLP Group:

  • At least 18 years of age.
  • Written and written authorization for use or release of health and research study information
  • Single or multiple upper and/or lower limb amputation
  • At least three months post-amputation
  • Ability to follow study instructions and likely to complete required visit(s)
  • Experienced PLP for at least one month and at least 3 times per week
  • Phantom limb pain differentiated from residual limb pain by physical exam.
  • Subjects taking blood thinners or other medications that do not increase risk during a blood draw.

Non-Chronic PLP Group:

  • At least 18 years of age.
  • Written informed consent and written authorization for use or release of health and research study information
  • Single or multiple upper and/or lower limb(s) amputation
  • At least three months post-amputation
  • Ability to follow study instructions and likely to complete required visit(s)
  • Experienced PLP less than 10 times total and/or for less than two weeks
  • Subjects taking blood thinners or other medications that do not increase risk during a blood draw.
Terms in these criteria, in plain language(1)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

05

Study design

Observational model
Case-control
Time perspective
Cross-sectional
Enrollment
726 participants (actual)
Biospecimen retention
Samples with dna

Groups and cohorts

  • Phantom Limb Pain

    Subjects will have lower or upper extremity amputation(s) that have resulted in the presence of phantom limb pain.

    Procedure: Blood Draw

  • No Phantom Limb Pain

    Subjects in the group will have a lower or upper extremity amputation(s) without the presence of phantom limb sensation.

    Procedure: Blood Draw

Interventions

  • ProcedureBlood Draw

    Single blood draw of 30 ml

    Also known as: Venipuncture

06

What researchers measure

Primary outcomes

  1. Identification of Unique Single Nucleotides Polymorphisms (SNPs) associated with Phantom Limb Pain (PLP)

    The primary outcome measure for this study is the identification of unique SNPs that may correlate with PLP. Patients will undergo a one-time blood draw and fill out a survey characterizing their phantom limb pain. The PLP characteristics along with DNA analysis using Affymetrix SNP chip technology will be used to match genotype with phenotype.

    Time frame: 5 years

Secondary outcomes

  1. Correlation between Phantom Limb Pain (PLP) and Blood Levels of Antibodies Associated with Peripheral Nerve Damage

    The underlying hypothesis of the secondary outcome measure is that damage to peripheral nerves provokes a humoral immune response to neuronal and glial proteins that can be detected by measuring specific antibodies in blood. The data obtained will lead to a more complete understanding of pathogenic mechanisms in PLP and potential biomarkers for sub-classification, prognosis, and intervention.

    Time frame: 5 years

  2. Correlation between Phantom Limb Pain (PLP) and Serum Levels of Brain-derived Neurotrophic Factor (BDNF)

    BDNF has been implicated in pain nociception and is therefore pertinent to our study of phantom limb pain. After peripheral nerve injury, BDNF expression is dramatically increased in pain receptors of the brainstem.

    Time frame: 5 years

  3. Correlation between Phantom Limb Pain (PLP) and Unique Transcribed RNA

    Many underlying causes for neuropathic pain involve changes in messenger ribonucleic acid (mRNA) levels because of altered gene expression or transcript stability. The study will isolate total RNA from blood and measure the relative amounts of transcribed RNA under the condition of phantom limb pain or no phantom limb pain.

    Time frame: 5 years

07

Study locations

1 site
  • Walter Reed National Military Medical Center (WRNMMC)
    Bethesda, Maryland 20889, United States
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References and documents

Publications

  • Montoya P, Larbig W, Grulke N, Flor H, Taub E, Birbaumer N. The relationship of phantom limb pain to other phantom limb phenomena in upper extremity amputees. Pain. 1997 Aug;72(1-2):87-93. doi: 10.1016/s0304-3959(97)00004-3. PubMed 9272791 ↗
  • Kooijman CM, Dijkstra PU, Geertzen JHB, Elzinga A, van der Schans CP. Phantom pain and phantom sensations in upper limb amputees: an epidemiological study. Pain. 2000 Jul;87(1):33-41. doi: 10.1016/S0304-3959(00)00264-5. PubMed 10863043 ↗
  • Ramachandran VS, Hirstein W. The perception of phantom limbs. The D. O. Hebb lecture. Brain. 1998 Sep;121 ( Pt 9):1603-30. doi: 10.1093/brain/121.9.1603. PubMed 9762952 ↗
  • Sherman RA, Sherman CJ, Parker L. Chronic phantom and stump pain among American veterans: results of a survey. Pain. 1984 Jan;18(1):83-95. doi: 10.1016/0304-3959(84)90128-3. PubMed 6709380 ↗
  • Katz J, Melzack R. Pain 'memories' in phantom limbs: review and clinical observations. Pain. 1990 Dec;43(3):319-336. doi: 10.1016/0304-3959(90)90029-D. PubMed 2293143 ↗
  • Jensen TS, Krebs B, Nielsen J, Rasmussen P. Phantom limb, phantom pain and stump pain in amputees during the first 6 months following limb amputation. Pain. 1983 Nov;17(3):243-256. doi: 10.1016/0304-3959(83)90097-0. PubMed 6657285 ↗

Individual participant data

Plan to share: No

09

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Aug 12, 2025, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT01462448
Lead sponsor
Henry M. Jackson Foundation for the Advancement of Military Medicine
Collaborators
Uniformed Services University of the Health Sciences
Responsible party
Sponsor
First posted
Oct 31, 2011
Start date
Mar 2012
Primary completion
Apr 2014
Completion
Aug 6, 2023
Last update
Aug 12, 2025

Study contacts

Paul F. Pasquina, MD, MC
principal investigator · Walter Reed National Military Medical Center (WRNMMC)

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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This study is completed, as verified in Aug 2025. You cannot join it, but the record below documents what was studied.

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