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Not yet recruitingNCT07880106Updated Oct 19, 2026

Multimodal Liquid-Biopsy Omics Biomarkers of Treatment Response in Breast Cancer

An observational study in Lung Cancer Non-small Cell, Colorectal Cancer and Stomach Cancer, sponsored by Sun Yat-Sen Memorial Hospital of Sun Yat-Sen University. Not yet recruiting at 1 site in China. Open to participants aged 18 Years to 80 Years, including healthy volunteers. Per ClinicalTrials.gov, last updated 2026-10-19.

Sponsored by Sun Yat-Sen Memorial Hospital of Sun Yat-Sen University · Observational

Updated Oct 19, 2026Newly registeredGo to Updates ↓
Study type
Observational
Model
Cohort
Time perspective
Other
Enrollment
2,000
Ages
18 Years to 80 Years
Sex
All
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Study summary

This single-center cohort study integrates humoral immune response profiling (Phage ImmunoPrecipitation Sequencing, PhIP-seq) with circulating cell-free DNA (cfDNA) genomic and epigenomic features, exosome transcriptomics, and plasma metabolomics to discover and validate liquid-biopsy biomarkers of treatment response in breast cancer.

The study comprises four cohorts: (1) a retrospective pan-cancer cohort of approximately 1,000 patients with solid malignant tumor, using archived residual serum/plasma to construct a pan-cancer antigen repertoire and cfDNA mutational/methylation atlas, with priority given to patients who had available Whole Exome Sequencing (WES) data; (2) a prospective cohort of 800 women with non-metastatic (M0) breast cancer receiving standard neoadjuvant chemotherapy (NAC); (3) a prospective cohort of 100 women with metastatic (M1) breast cancer receiving standard systemic therapy; and (4) a control group of 100 individuals, including patients with benign breast disease (breast fibroadenoma) and healthy volunteers.

The primary objective is to identify biomarkers-autoantibody repertoires, cfDNA mutation clearance, methylation reprogramming, exosome transcripts, and metabolic signatures-associated with pathological complete response (pCR) to NAC, and to develop predictive models where feasible.

Read the detailed description

Peripheral blood (20 mL) is collected at protocol-defined time points. Serum/Plasma autoantibody repertoires are profiled by PhIP-seq(phage-display immunoprecipitation sequencing); cfDNA methylation is measured by bisulfite-free methylome profiling; exosome RNA is profiled by strand-specific RNA sequencing; and untargeted plasma metabolomics is performed by liquid chromatography-tandem mass spectrometry. The study endpoints include clinical response and pathological complete response after NAC, together with survival follow-up. The study is conducted in accordance with the Declaration of Helsinki and Chinese regulations for investigator-initiated research, and has been approved by the institutional ethics committee.

Ambispective - a retrospective pan-cancer cohort (archived samples, 2020 Jan - 2026. Sep) combined with prospective breast cancer cohorts (enrollment 2026. Oct -2029)

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Conditions studied

  • Lung Cancer Non-small Cell
  • Colorectal Cancer
  • Stomach Cancer
  • Hepatocellular Carcinoma
  • Breast Cancer

Keywords

  • Liquid biopsy
  • PhIP-seq
  • Neoadjuvant chemotherapy
  • cfDNA methylation
  • Pathological complete response
03

In context

Carcinoma, Non-Small-Cell Lung

6,641 studies on the registry are indexed under Carcinoma, Non-Small-Cell Lung; 1,665 are open to participants now.

This study's planned enrollment of 2,000 is above the median of 164 across 974 observational studies indexed under Carcinoma, Non-Small-Cell Lung.

Browse Carcinoma, Non-Small-Cell Lung studies →

Lead sponsor

Sun Yat-Sen Memorial Hospital of Sun Yat-Sen University is the lead sponsor of 477 studies on the registry; 278 are open to participants now.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
18 Years to 80 Years
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

Study participants will be selected from three main sources: (1) healthy female volunteers recruited for this study; (2) patients receiving clinical treatment at our institution; and (3) patients undergoing relevant diagnostic or clinical examinations at our institution.

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

Retrospective pan-cancer cohort:

  1. Aged 18 to 80 years;
  2. Both genders
  3. Clinically and histopathologically confirmed diagnosis of solid malignant tumors, including but not limited to non-small cell lung cancer, colorectal cancer, gastric cancer, hepatocellular carcinoma, or breast cancer.
  4. Complete clinical data available, including definitive TNM stage and established treatment plan;
  5. Archived peripheral blood samples (serum/plasma) collected during routine clinical care.

Prospective neoadjuvant chemotherapy (NAC) breast cancer cohort:

  1. Female, aged 18 to 80 years (inclusive);
  2. Clinically and pathologically confirmed non-metastatic (M0) breast cancer;
  3. Planned standard NAC at the study site, with complete pre-treatment ER, PR, and HER2 immunohistochemistry results available;
  4. Voluntary participation with signed written informed consent.

Prospective metastatic breast cancer cohort:

  1. Female, aged 18 to 80 years (inclusive);
  2. Clinically and pathologically confirmed metastatic (M1) breast cancer;
  3. Planned standard systemic therapy at the study site, with complete ER, PR, and HER2 immunohistochemistry results available;
  4. Voluntary participation with signed written informed consent.

Benign/Healthy control group:

  1. Healthy female volunteers, or female patients with breast fibroadenoma undergoing minimally invasive biopsy during the same period;
  2. Voluntary participation with signed written informed consent.

Exclusion criteria

Exclusion Criteria:

For prospective breast cancer cohorts:

  1. History of mastitis, or systemic rheumatic/autoimmune diseases (e.g., systemic lupus erythematosus, rheumatoid arthritis);
  2. Acute or chronic infectious diseases within the past 6 months (e.g., pneumonia, pulmonary tuberculosis, active hepatitis);
  3. Long-term use of glucocorticoids, immunosuppressants, biologic agents, or psychotropic medications (short-term or as-needed use excepted);
  4. Inability or refusal to provide informed consent.
05

Study design

Observational model
Cohort
Time perspective
Other
Enrollment
2,000 participants (estimated)
Patient registry
No
Biospecimen retention
Samples with dna

Groups and cohorts

  • Retrospective Pan-Cancer Cohort

    Patients aged 18-80 years with histologically confirmed solid malignant tumors( e.g. non-small cell lung cancer, colorectal cancer, gastric cancer, hepatocellular carcinoma, or breast cancer), diagnosed at the study site between January 2020 and Sep 2026, with complete clinical data (TNM stage and treatment plan) and archived residual serum/plasma samples. Approximately 1,000 cases.

  • Prospective Neoadjuvant Chemotherapy (NAC) Breast Cancer Cohort

    Women aged 18-80 years with clinically and pathologically confirmed non-metastatic (M0) breast cancer who plan to receive standard NAC at the study site, with complete pre-treatment ER, PR, and HER2 immunohistochemistry results. Planned enrollment: 800. Peripheral blood (20 mL) is collected before, during, and after NAC (pre-surgery), in addition to routine clinical data.

  • Prospective Benign/Control Group (Breast Fibroadenoma or Healthy Volunteers)

    Patients with breast fibroadenoma undergoing minimally invasive biopsy during the same period, serving as benign controls to calibrate background signals of circulating antigens and liquid-biopsy analytes. Healthy female volunteers will also be enrolled. Planned enrollment: 100.

  • Prospective Metastatic Breast Cancer Cohort

    Women aged 18-80 years with clinically and pathologically confirmed metastatic (M1) breast cancer who plan to receive standard systemic therapy at the study site, with complete ER, PR, and HER2 immunohistochemistry results.Planned enrollment: 100. Serial peripheral blood samples are collected before, during, and after treatment.

06

What researchers measure

Primary outcomes

  1. Pathological Complete Response (pCR) Rate

    Proportion of patients achieving pCR after completion of neoadjuvant chemotherapy, defined as ypT0/is ypN0 (no invasive cancer in the breast and ipsilateral axillary lymph nodes; ductal carcinoma in situ may be present), consistent with RCB-0.

    Time frame: At definitive surgery after completion of NAC (approximately 4-6 months after NAC initiation)

Secondary outcomes

  1. Residual Cancer Burden (RCB) Class

    RCB class (RCB-0, RCB-I, RCB-II, RCB-III) quantifying residual tumor in the breast and lymph nodes after neoadjuvant therapy, calculated using the internationally validated MD Anderson Cancer Center RCB calculator based on standardized pathological assessment of surgical specimens.

    Time frame: At definitive surgery after completion of NAC (approximately 4-6 months after NAC initiation)

  2. Invasive Disease-Free Survival (iDFS)

    Time from enrollment to the first occurrence of any of the following: ipsilateral invasive breast cancer recurrence, contralateral invasive breast cancer, distant metastasis, second primary non-breast invasive malignancy, or death from any cause (conservative definition including all deaths), per established consensus definitions. Follow-up includes clinical visits and imaging (breast ultrasound/MRI, chest-abdominal CT, bone scan as risk-stratified) every 6 months.

    Time frame: From enrollment until event or study end, assessed every 6 months (up to approximately 5 years)

  3. Progression-Free Survival (PFS)

    Time from enrollment to the first radiographically confirmed disease progression (per RECIST 1.1) or death from any cause. This outcome is only available for M1 patients.

    Time frame: From enrollment until event or study end (up to approximately 5 years)

  4. Overall Survival (OS)

    Time from enrollment to death from any cause. Death events are confirmed by death certificates, hospital records, or national vital registration systems. Patients lost to follow-up are censored at the date of last contact.

    Time frame: From enrollment until death or study end (up to approximately 5 years or longer)

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Study locations

1 site
  • Shenshan Medical Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University
    Shanwei, Guangdong 516601, China
08

References and documents

Individual participant data

Plan to share: Undecided — De-identified individual participant data may be made available upon reasonable request to the corresponding investigator after publication of the primary results, subject to institutional and ethics committee approval.

No publications or documents are linked to this record.

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Timeline

1 registry update since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reachedSimilar studies: half by the dot; the band is the middle halfHalf of similar studies reached it by the dot; the band is the middle half, from a quarter to three quarters

Start is estimated for Oct 2026; primary completion for Jun 2030, 44 months later.

Of 312 non-industry observational studies under Carcinoma, Non-Small-Cell Lung, half reached primary completion within 60 months of starting (the median), counting those still running; a quarter within 36 and three quarters within 155. This study's planned 44 months is below that.

Counting every sponsor, half of 440 studies reached it within 56 months; a quarter within 36 and three quarters within 89.

How these figures are worked out, and which studies are left out of them.

Registered
Oct 11, 2026
First posted
Oct 19, 2026
StartEst.
Oct 1, 2026
Primary completionEst.
Jun 30, 2030
CompletionEst.
Dec 30, 2034
Last update
Oct 19, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
Registered
First appeared on the registry. No changes since
Oct 19, 2026
Show all 1 update
  1. Oct 19, 2026
    First appeared on the registry

From the registry record's own update history. This site started tracking changes on Sep 25, 2026; for anything earlier, see the record history on ClinicalTrials.gov ↗

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Registry details

Key details

Study ID
NCT07880106
Collaborators
Shenshan Medical Center of Sun Yat-sen Memorial Hospital
Responsible party
Chen Kai (MD, Sun Yat-Sen Memorial Hospital of Sun Yat-Sen University) — Principal investigator
First posted
Oct 19, 2026
Start date
Oct 1, 2026 (estimated)
Primary completion
Jun 30, 2030 (estimated)
Completion
Dec 30, 2034 (estimated)
Last update
Oct 19, 2026

Study contacts

Kai Chen Principal Investigator, MD, PhD
Contact
chenkai23@mail.sysu.edu.cn
+86 0660-3863000

Oversight

FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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This study is not yet recruiting, as verified in Oct 2026. You cannot join it, but the record below documents what was studied.

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