ClinicalTrials.gg
Active, not recruitingNCT05779904MINUTESUpdated Jul 3, 2024

Methylation, mIcrobiome, NUtritional sTatus, and dEvelopment of Stunted Children

An observational study in Stunting, Development, Child and DNA Methylation, sponsored by SEAMEO Regional Centre for Food and Nutrition. Active, not recruiting at 1 site in Indonesia. Open to participants aged 18 Months to 23 Months, including healthy volunteers. Per ClinicalTrials.gov, last updated 2024-07-03.

Sponsored by SEAMEO Regional Centre for Food and Nutrition · Observational

Study type
Observational
Model
Case-control
Time perspective
Cross-sectional
Enrollment
300
Ages
18 Months to 23 Months
Sex
All
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Study summary

The investigators will conduct a case-control study among under-two children in Lombok Timur, West Nusa Tenggara, Indonesia. The power required to detect changes in epigenetic markers may not be sufficient in the cohort study. Therefore, specific case-control design of stunted vs non-stunted children will provide the required power to detect potential epigenetic markers which will be further investigated through targeted sequencing of the cohort study. A total of 150 stunted children will be recruited and then it will be matched with 150 non-stunted children with the same sex. The assessments for these study subjects will include: 1) The genetic and epigenetic profile of the children, gut microbiota and nutritional status (Physical component), 2) Food security, Water, Sanitation and Hygiene (WASH) and Infant and Young Child Feeding (IYCF) practices (Home-Food component), 3) Children's psychosocial care and cognitive outcome (Cognition component).

Read the detailed description

This study is part of Action Against Stunting Hub, an observational cohort study aimed to build evidence based on exploring the drivers of stunting from different perspectives and understand the impact of different interventions across three countries: India, Indonesia and Senegal. This study is intended to give the overview of stunting and its determinants among under-two children growing up during period of Covid-19 pandemic in Lombok Timur, Nusa Tenggara Barat, Indonesia. Because, the power required to detect changes in epigenetic markers may not be sufficient in the cohort study, this specific case-control design of stunted vs non-stunted children will also provide the required power to detect potential epigenetic markers which will be further investigated through targeted sequencing of the cohort study. The results of this initial study are projected to support further study, especially the observational cohort study, in determining the best suited indicators to prove the interaction and/or causal mechanisms of stunting.

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Conditions studied

  • Stunting
  • Development, Child
  • DNA Methylation
  • Epigenetics
  • Nutrition

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Keywords

  • Epigenetics signature
  • Case-control
  • Under-two-year-old children
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In context

Growth Disorders

227 studies on the registry are indexed under Growth Disorders; 25 are open to participants now.

This study's planned enrollment of 300 is above the median of 231 across 78 observational studies indexed under Growth Disorders.

Browse Growth Disorders studies →

Lead sponsor

SEAMEO Regional Centre for Food and Nutrition is the lead sponsor of 13 studies on the registry; 1 is open to participants now.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
18 Months to 23 Months
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

A total of 150 stunted children (case) will be recruited and then it will be matched with 150 non-stunted children (control) with the same sex. Before the screening time, data of children aged 18.0-23.9 months from Posyandu will be listed. The field team will coordinate with midwives to inform the children and their guardian to get screened. Screening for eligibility criteria will be done for all children aged 18.0-23.9 months that has listed in the previous visit. Length measurement for the children and checklist of eligibility criteria will be done during the screening time by trained enumerators. After fulfilling the eligibility criteria, the enumerators have to determine to matched children based on their gender.

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • aged 18.0 - 23.9 months
  • without serious illnesses
  • the mother delivered the children between 18-40 years of age
  • has Sasak ethnicity, (5) recumbent length \<-2SD (for stunted group) and >-1SD (for non- stunted group) from the WHO Child Growth Standards median for their age and sex at the recruitment.

Exclusion criteria

Exclusion Criteria:

  • twin birth
  • congenital malformation
  • consanguinity
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Study design

Observational model
Case-control
Time perspective
Cross-sectional
Enrollment
300 participants (estimated)
Patient registry
No

Groups and cohorts

  • Stunted (Case)

    In the case group, stunted children (\<-2SD) (n=150) will be recruited.

  • Non-stunted (Control)

    In the control group, non-stunted children (\>-1SD) (n=150) will be recruited.

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What researchers measure

Primary outcomes

  1. Epigenetics signature related to stunting

    Analysis of epigenetic states (DNA methylation) will be carried out using the Illumina Infinium Methylation EPIC V.2.0 BeadChip, augmented by sequencing methodologies to provide both genome wide coverage and high-definition analysis. Epigenetic state controls gene expression and overall genome regulation at scale and the study will focus on candidate epigenetic states implicated in stunting and its corollaries alongside epigenome wide association.

    Time frame: at enrollment

Secondary outcomes

  1. Child congnition outcomes (by psychologists)

    Cognitive development will be assessed using the full Bayley Scales of Infant and Toddler Development (BSID-4) by trained psychologists. BSID-4 consists of: Cognitive Scale (COG); Language Scale (LANG), and Motoric Scale (MOT). The range of Standard Score (SS) of each scale is 40-160 in which higher score means better.

    Time frame: at enrollment

  2. Child cognition outcomes (care giver reported)

    Cognitive development will be assessed using the care giver reported tool, i.e., INTERGROWTH-21st Neurodevelopment assessment INTER-NDA by trained enumerators. INTER-NDA consists of: Cognitive; Fine motor; Gross motor; Language; Positive behavior; Negative behavior. The range of score on each scale is 0 - 100 in which higher score means better.

    Time frame: at enrollment

  3. Gut microbiome

    Faecal microbiome would be analyzed using 16S RNA sequencing of the V4 region on the Illumina MiSeq platform

    Time frame: at enrollment

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Study locations

1 site
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References and documents

Publications

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Individual participant data

Plan to share: No

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Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Jul 3, 2024, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT05779904
Lead sponsor
SEAMEO Regional Centre for Food and Nutrition
Responsible party
Dr.Umi Fahmida (Principal Investigator, SEAMEO Regional Centre for Food and Nutrition) — Principal investigator
First posted
Mar 22, 2023
Start date
Apr 5, 2023
Primary completion
Dec 31, 2023
Completion
Sep 2024 (estimated)
Last update
Jul 3, 2024

Study contacts

Umi Fahmida, Dr.
principal investigator · SEAMEO RECFON

Oversight

Data monitoring committee
Yes
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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