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RecruitingNCT04461821EBECAUpdated May 8, 2026

Exhaled Breath Analysis by Secondary Electrospray Ionization - Mass Spectrometry in Children and Adolescents

An observational study in Respiratory Diseases, Neurological Disorders and Type 1 Diabetes, sponsored by University Children's Hospital Basel. Recruiting at 1 site in Switzerland. Open to participants aged Up to 22 Years. Per ClinicalTrials.gov, last updated 2026-05-08.

Sponsored by University Children's Hospital Basel · Observational

From the registry’s dates

  • Started Sep 2020; still recruiting 6 years later.
Study type
Observational
Model
Cohort
Time perspective
Prospective
Enrollment
3,600
Ages
Up to 22 Years
Sex
All
01

Study summary

This study is to investigate breath analysis (breath metabolomics) combined with established bioinformatic tools as a platform for companion diagnostics.

Read the detailed description

Therapeutic drug monitoring (TDM) is defined as measuring concentrations of a drug at one or more time points in a biological matrix after a dose. The purpose of TDM is to individualize the drug dose to achieve maximum efficacy and at the same time minimize toxicity. The concept of TDM could potentially be even more valuable if in addition to drug concentrations, other drug-regulated and drug-related metabolites could be included in the models to define optimal dosage. There exists a clinical need to stratify patients with better precision to improve current clinical and therapeutic management. Breath analysis offers an opportunity to non-invasively retrieve relevant information on the ongoing internal biochemical processes, as well as to monitor the respiratory system itself. For breath analysis, a Secondary Electrospray ionization - mass spectrometry (SESI-MS) breath analysis platform will be used to capture disease-related, drug-regulated and drug-related metabolites (breath metabolomics) in exhaled breath. This information, retrieved in parallel to standard of care clinical co-variates, could have the potential to provide a more personalized therapeutic management of patients.

02

Conditions studied

  • Respiratory Diseases
  • Neurological Disorders
  • Type 1 Diabetes

Keywords

  • Exhaled breath analysis
  • Therapeutic drug monitoring (TDM)
  • Secondary Electrospray ionization - mass spectrometry (SESI-MS)
  • breath analysis platform
  • breath metabolomics
03

In context

Respiratory Tract Diseases

617 studies on the registry are indexed under Respiratory Tract Diseases; 111 are open to participants now.

This study's planned enrollment of 3,600 is above the median of 294 across 216 observational studies indexed under Respiratory Tract Diseases.

Browse Respiratory Tract Diseases studies →

Lead sponsor

University Children's Hospital Basel is the lead sponsor of 27 studies on the registry; 9 are open to participants now.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
Up to 22 Years
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Probability sample

Study population

Participants presenting with an acute disease in the emergency department at the University of Basel Children's Hospital (UKBB).

Participants with chronic diseases recorded at the University of Basel Children's Hospital (UKBB).

Inclusion criteria

  • Age 0 ≤ 22 years at study entry and signed informed consent

Additional inclusion criteria for respiratory disease population:

  • Acute disease: - Acute signs for a respiratory disease, indicated by e.g. increased work of breathing (e.g. dyspnea, increased respiratory rate), cough or wheezing.
  • Chronic disease: - Suspected or confirmed chronic airway disease (e.g. asthma).

Additional inclusion criteria for neurological disease population:

  • Acute disease: - Acute presentation or report within 24 hours of any signs of neurological deficit (motor function, sensoneural, or verbal).
  • Chronic disease: - Confirmed chronic neurologic disease (e.g. childhood epilepsy).

Additional inclusion criteria for T1D disease population:

  • Acute disease: - Hyperglycemia and/or pH (venous) \<7.3, bicarbonate >10 mmol/L, increased levels of acetone in blood or urine in the context of newly diagnosed or known T1D.
  • Chronic disease: - Confirmed diagnosis of T1D

Exclusion criteria

Exclusion Criteria:

  • Physical or intellectual impairment precluding protocol adherence.

Additional exclusion criteria for respiratory disease population:

  • Known malignancy, active smoker (passive smoke exposure is not an exclusion criterium), known inflammatory diseases (e.g. autoimmune disease) that require medical and/or pharmacological treatment and is associated with an inflammatory response, relevant congenital defects

Additional exclusion criteria for neurological disease population:

  • Known malignancy, active smoker (passive smoke exposure is not an exclusion criterium), known inflammatory diseases (e.g. autoimmune disease) that require medical and/or pharmacological treatment and is associated with an inflammatory response, relevant congenital defects.

Additional exclusion criteria for T1D population:

  • Known malignancy, active smoker (passive smoke exposure is not an exclusion criterium), relevant congenital defects.
05

Study design

Observational model
Cohort
Time perspective
Prospective
Enrollment
3,600 participants (estimated)
Patient registry
No
Biospecimen retention
Samples without dna

Groups and cohorts

  • obstructive bronchitis/bronchiolitis

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pneumonia

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • asthma

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • neurological diseases

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • type 1 diabetes (T1D)

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis · Diagnostic Test: Saliva analysis · Diagnostic Test: Urine analysis

  • pharmacotherapy with bronchodilators

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pharmacotherapy with antibiotics

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pharmacotherapy with antiviral medication

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pharmacotherapy with antifungal medication

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pharmacotherapy with antiepileptic medication

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pharmacotherapy with immuno suppressants and immune-modulati

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

  • pharmacotherapy with anesthesia (including sedating, analges

    Diagnostic Test: Real-time SESI-MS breath analysis · Diagnostic Test: Off-line breath analysis · Diagnostic Test: Blood analysis

Interventions

  • Diagnostic testReal-time SESI-MS breath analysis

    Participants will be asked to refrain from eating, drinking, chewing gum use or brushing their teeth at least 1 hour before the measurements will be performed. Room temperature and lighting will be set at the same level for all measurements. Participants will exhale through a disposable mouthpiece into a commercially available SESI source (FIT S.L., Spain). While performing full exhalations, the subjects will keep the pressure through the sampling line at a fixed value monitored by a digital manometer. Breath prints will be collected in real-time recording multiple replicates (typically six in positive and negative ion mode). The whole procedure is absolutely non-invasive and is usually accomplished without any effort in around 15 min per subject.

  • Diagnostic testOff-line breath analysis

    In young children below the age of 4 not capable of completing the on-line exhalation maneuvers, or in cases when the patient needs cannot approach the mass spectrometer, the sample will be collected off-line. They will be asked to exhale into a bag that will be transported to the lab and deflated into the mass spectrometer for analysis. Exhaled breath of patients under anesthesia will also collected using available ventilation system in the operation theatre.

  • Diagnostic testBlood analysis

    Blood analysis done in patients who undergo regular blood sampling needed for clinical routine laboratory controls. This includes i) children and adolescents receiving medications which require TDM ii) patients with acute diseases such as TD1 and pneumonia and iii) patients with chronic diseases such as asthma bronchiale. For those patients where a blood sample is drawn during the clinical routine, an additional blood sample consisting of only several blood drops will be collected using the same blood sampling line. No additional venous puncture for research purpose will be done.

  • Diagnostic testSaliva analysis

    During the diagnostic and therapeutic work-up of T1D patients, saliva samples are collected during the clinical routine. For those patients, additional samples will be obtained by clinically trained investigators.

  • Diagnostic testUrine analysis

    During the diagnostic and therapeutic work-up of T1D patients, urine samples are collected during the clinical routine. For those patients, additional samples will be obtained by clinically trained investigators.

06

What researchers measure

Primary outcomes

  1. Days of hospitalization

    In the presentation of an acute disease the primary outcome will be days of hospitalization and its association with the exhaled breath pattern.

    Time frame: approx 30 days (from beginn hospitalisation to discharge date)

  2. Change in Mass spectrometric profile of exhaled breath patterns

    In the chronic presentation of the diseases, the mass spectrometric profile of exhaled breath patterns is analyzed

    Time frame: Week 0 (first regular clinic visit) to Follow-up visits (approx. years 1-10)

  3. Change in Concentration of exhaled metabolites of pharmacotherapy

    Concentration of exhaled metabolites of pharmacotherapy (breath metabolomics data)

    Time frame: Week 0 (first regular clinic visit) to Follow-up visits (approx. years 1-10)

Secondary outcomes

  1. Identification of chemical structure of exhaled molecules (acetone, glucose)

    Identification of chemical structure of exhaled molecules (acetone, glucose)

    Time frame: approx 30 days (from begin hospitalisation to discharge date)

  2. Correlations of identified molecules (acetone, glucose) in exhaled breath with body fluids (blood, saliva, urine) for T1D acute disease (mmol/l)

    Correlations of identified molecules (acetone, glucose) in exhaled breath with body fluids (blood, saliva, urine) for T1D acute disease (mmol/l)

    Time frame: 0h, 2h, 4h, 6h, 8h, 12h, 18h, 24h, 36h, 48h, 72h (h =hours after hospital admission)

  3. Change in clinical endpoint lung function (Forced Expiratory Pressure in 1 Second FEV1 l/s) for correlation between clinical endpoint and the abundance of exhaled metabolites

    Change in clinical endpoint lung function (Forced Expiratory Pressure in 1 Second FEV1 l/s) for correlation between clinical endpoint and the abundance of exhaled metabolites

    Time frame: approx 10 years (from begin hospitalisation to discharge date and from first regular clinic visit to Follow-up visits)

  4. Change in clinical endpoint (body temperature, Celsius) for correlation between clinical endpoint and the abundance of exhaled metabolites

    Change in clinical endpoint (body temperature) for correlation between clinical endpoint and the abundance of exhaled metabolites

    Time frame: approx 10 years (from begin hospitalisation to discharge date and from first regular clinic visit to Follow-up visits)

  5. Change in clinical endpoint (blood pressure, mmHg) for correlation between clinical endpoint and the abundance of exhaled metabolites

    Change in clinical endpoint (blood pressure) for correlation between clinical endpoint and the abundance of exhaled metabolites

    Time frame: approx 10 years (from begin hospitalisation to discharge date and from first regular clinic visit to Follow-up visits)

07

Study locations

1 of 1 sites recruiting
  • University Children's Hospital Basel (UKBB)
    Basel, 4031, Switzerland
    • Pablo Sinues, Prof. Dr. · Contact · pablo.sinues@ukbb.ch · +41 61 704 2949
    • Mélina Richard · Contact · melinadenise.richard@unibas.ch · +41 61 704 14 11
    • J Usemann, Dr. med. · Sub investigator
    • U Fray, Prof. Dr. med. · Sub investigator
    • A Datta, PD Dr. med. · Sub investigator
    • G Szinnai, PD Dr. med. · Sub investigator
    • A Jochmann, Dr. med. · Sub investigator
    • T Erb, Prof. Dr. med. · Sub investigator
    Recruiting
08

References and documents

Publications

  • Zeng J, Stankovic N, Singh KD, Steiner R, Frey U, Erb T, Sinues P. Breath Analysis of Propofol and Associated Metabolic Signatures: A Pilot Study Using Secondary Electrospray Ionization-High-resolution Mass Spectrometry. Anesthesiology. 2025 Aug 1;143(2):345-356. doi: 10.1097/ALN.0000000000005531. Epub 2025 Apr 21. PubMed 40258137 ↗
09

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on May 8, 2026, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT04461821
Lead sponsor
University Children's Hospital Basel
Collaborators
Swiss National Science Foundation, Fondation Botnar (Switzerland)
Responsible party
Sponsor
First posted
Jul 8, 2020
Start date
Sep 11, 2020
Primary completion
Jul 2030 (estimated)
Completion
Jul 2030 (estimated)
Last update
May 8, 2026

Study contacts

Pablo Sinues, Prof. Dr.
Contact
pablo.sinues@ukbb.ch
+41 61 704 2949
Mélina Richard
Contact
melinadenise.richard@unibas.ch
+41 61 704 14 11
Pablo Sinues, Prof. Dr.
principal investigator · University Children's Hospital Basel

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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