ClinicalTrials.gg
CompletedNCT04399694Updated Jan 15, 2026

Identification and Characterization of Novel Non-Coding Variants That Contribute to Genetic Disorders

An observational study in Genetic Disease, Inborn Errors of Metabolism and Glycogen Storage Disease, sponsored by Duke University. Completed at 1 site in United States. Per ClinicalTrials.gov, last updated 2026-01-15.

Primary conditionMetabolism, Inborn ErrorsRegistry: Genetic Diseases, InbornReclassifiedWhy we changed it
Registry
Genetic Diseases, Inborn — the first condition term the registry derived for this study.
ClinicalTrials.gg
Metabolism, Inborn Errors
Why
  1. The study's listed conditions name Metabolism, Inborn Errors, a narrower term within Genetic Diseases, Inborn.
Confidence
High: the new condition is named in the study's own listed conditions. Of 351 hand-checked studies reclassified this way, 68% were exactly right and 84% in the right disease family; the registry's first term was right for 5% (measured 2026-10-21). How we classify →
Wrong?
Tell us the study's main condition →

Sponsored by Duke University · Observational

Study type
Observational
Model
Case-only
Time perspective
Prospective
Enrollment
56
Sex
All
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Study summary

The goal of this study is to identify and characterize novel non-coding and splicing variants that may contribute to genetic disorders. We will particularly focus on patients with a diagnosed genetic disorder that has inconclusive genetic findings.

Read the detailed description

To perform this study, we will use patient DNA and RNA that is isolated from blood samples. DNA will be sequenced (targeted capture and/or whole genome DNA sequencing (WGS)) to identify any non-coding single nucleotide variants (SNVs), smaller insertions/deletions (indels), or larger structural variants (SVs). RNA will be sequenced (RNA-seq) to identify genes that are expressed in a differential and/or allele-specific manner, which may indicate a functional non-coding or splicing variant. We will test the function of non-coding variants using high-throughput reporter assays and CRISPR based methodologies.

02

Conditions studied

  • Genetic Disease
  • Inborn Errors of Metabolism
  • Glycogen Storage Disease
  • Lysosomal Storage Diseases
  • Storage Disease
03

In context

Metabolism, Inborn Errors Reclassified

152 studies on the registry are indexed under Metabolism, Inborn Errors; 22 are open to participants now.

This study's enrollment of 56 is below the median of 65 across 45 observational studies indexed under Metabolism, Inborn Errors.

Browse Metabolism, Inborn Errors studies →

Lead sponsor

Duke University is the lead sponsor of 2,063 studies on the registry; 273 are open to participants now.

Of its 204 completed or terminated interventional studies of FDA-regulated products, 167 (82%) have results posted.

Compared within Metabolism, Inborn Errors, this study's primary condition as ClinicalTrials.gg classifies it; the registry's first condition term is Genetic Diseases, Inborn. The counts are of registry records indexed under each term, refreshed daily. How we classify →

04

Who can participate

Ages eligible
Child (0–17), Adult (18–64), Older adult (65+)
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Non-probability sample

Study population

Patients with diagnosed genetic disease and inconclusive genetic results and their unaffected family members

Eligibility criteria

Inclusion criteria:

Subjects will have one or more of the following:

  • Patients (probands) diagnosed with a genetic disease
  • Patients (probands) with inconclusive genetic results
  • Patients (probands) that have identical coding and/or splicing variants, but display highly diverse phenotypes
  • Unaffected family members of probands

Exclusion Criteria: There are no exclusion criteria for this study.

05

Study design

Observational model
Case-only
Time perspective
Prospective
Enrollment
56 participants (actual)
Patient registry
No
Biospecimen retention
Samples with dna
06

What researchers measure

Primary outcomes

  1. Number of missing pathogenic protein coding variants

    Time frame: 2 years

07

Study locations

1 site
  • Duke University
    Durham, North Carolina 27710, United States
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References and documents

Individual participant data

Plan to share: Yes — Data will be submitted to dbGaP, casual variants to ClinVar, aggregate rare phenotype and variant data to Geno2MP and other databases, candidate genes via a public list and linked to a node of the MatchMaker Exchange (MyGene2).

Supporting information: Clinical study report

Time frame: Data will be available 7-12 months after results are generated and will be available forever.

No publications or documents are linked to this record.

09

Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reached

Ran from Mar 2020 to primary completion in Apr 2024, 49 months.

How these figures are worked out, and which studies are left out of them.

Registered
May 15, 2020
First posted
May 22, 2020
StartActual
Mar 3, 2020
Primary completionActual
Apr 11, 2024
CompletionActual
Apr 11, 2024
Last update
Jan 15, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Jan 15, 2026, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT04399694
Lead sponsor
Duke University
Responsible party
Sponsor
First posted
May 22, 2020
Start date
Mar 3, 2020
Primary completion
Apr 11, 2024
Completion
Apr 11, 2024
Last update
Jan 15, 2026

Study contacts

Priya Kishnani, MD
principal investigator · Duke
Greg Crawford, PhD
principal investigator · Duke

Oversight

Data monitoring committee
Yes
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

Not currently enrolling

This study is completed, as verified in Jan 2026. You cannot join it, but the record below documents what was studied.

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