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CompletedNCT03515070Updated Feb 20, 2020

Microbiome and Genetic Analysis of Familial IBD

An observational study in Inflammatory Bowel Diseases, sponsored by Kyunghee University Medical Center. Completed at 1 site in South Korea. Per ClinicalTrials.gov, last updated 2020-02-20.

Sponsored by Kyunghee University Medical Center · Observational

Study type
Observational
Model
Family-based
Time perspective
Cross-sectional
Enrollment
25
Sex
All
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Study summary

Inflammatory bowel disease(IBD) is a chronic inflammatory condition for gastrointestinal tract.

Regarding its pathogenesis, there has been numerous studies to reveal the complex association between genetic and environmental factors.

In Korea, the incidence of IBD is growing rapidly but genetic studies solely including patients with Korean descent were not sufficient enough.

Therefore, the investigators planned to conduct genetic and fecal microbial analysis for the 60 individuals from 30 Korean IBD families to find out the pathogenesis of IBD.

Read the detailed description

Under the hypothesis that more risk variants will be observed among the familial IBD patient than in IBD patients without any other affected family members, the investigators designed genetic and fecal microbiome analysis for 60 patients form 30 families.

After extracting the DNA from blood samples, whole genome sequencing will be performed and data will be comprared with the previously reported variances. Novel variances or incidence of specific variances will be measured.

Genome-wide single nucleotide polymorphism array using Immunochip will be performed to search common genetic variants and to calculate genetic risk score of IBD.

In this study, fecal microbiome is a surrogate marker for the enviromental aspect of pathogenesis of IBD. The investigators assumed that family members are sharing similar mode of lifestyle therefore we're presumed that their fecal microbial composition is alike.

Comparing genetic and microbial datas altogether with the data from unaffected family member(Healthy internal control), investigators expecting to explain the genetic and enviromental aspect of IBD pathogenesis.

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Conditions studied

  • Inflammatory Bowel Diseases

Keywords

  • Gastrointestinal Microbiome
  • Genetics
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In context

Inflammatory Bowel Diseases

1,487 studies on the registry are indexed under Inflammatory Bowel Diseases; 434 are open to participants now.

This study's enrollment of 25 is below the median of 146 across 659 observational studies indexed under Inflammatory Bowel Diseases.

Browse Inflammatory Bowel Diseases studies →

Lead sponsor

Kyunghee University Medical Center is the lead sponsor of 63 studies on the registry; 5 are open to participants now.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
Child (0–17), Adult (18–64), Older adult (65+)
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

The investigators are planned to study family members with IBD(Crohn's disease or ulcerative colitis).

They are all Koreal descent and study candidates are two patients from each 30 families. As a healthy internal control, another family member without IBD history will be also enrolled.

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • 60 individuals from 30 families of Crohn's disease or ulcerative colitis.
  • Unaffected 30 individuals from each family as healthy internal control.

Exclusion criteria

Exclusion Criteria:

  • Person with history of using antibiotics or probiotics within previous 4 weeks.
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Study design

Observational model
Family-based
Time perspective
Cross-sectional
Enrollment
25 participants (actual)
Target follow-up
1 Year
Patient registry
Yes
Biospecimen retention
Samples with dna
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What researchers measure

Primary outcomes

  1. Rare genetic variants of inflammatory bowel disease

    Results from whole genome sequencing of blood samples of study participants. Planned to compare with the previously reported variances.

    Time frame: Three months after the sample collection

  2. Common genetic variants of inflammatory bowel disease

    Results from genome-wide single nucleotide polymorphism array of blood samples of study participants. Planned to compare with the previously reported variances.

    Time frame: Three months after the sample collection

  3. Genetic risk score of inflammatory bowel disease

    Results from genome-wide single nucleotide polymorphism array of blood samples of study participants. Planned to compare with the previously reported variances.

    Time frame: Three months after the sample collection

  4. Fecal microbiome composition of each study subjects

    Microbial diversity measured from 16S RNA sequencing datas of fecal microbiomes.

    Time frame: Three months after the sample collection

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Study locations

1 site
  • Kyung Hee University Medical Center
    Seoul, 180-702, South Korea
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References and documents

Publications

  • Wellcome Trust Case Control Consortium. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature. 2007 Jun 7;447(7145):661-78. doi: 10.1038/nature05911. PubMed 17554300 ↗
  • Thia KT, Loftus EV Jr, Sandborn WJ, Yang SK. An update on the epidemiology of inflammatory bowel disease in Asia. Am J Gastroenterol. 2008 Dec;103(12):3167-82. doi: 10.1111/j.1572-0241.2008.02158.x. PubMed 19086963 ↗
  • Lashner BA, Evans AA, Kirsner JB, Hanauer SB. Prevalence and incidence of inflammatory bowel disease in family members. Gastroenterology. 1986 Dec;91(6):1396-400. doi: 10.1016/0016-5085(86)90193-9. PubMed 3770366 ↗
  • Stittrich AB, Ashworth J, Shi M, Robinson M, Mauldin D, Brunkow ME, Biswas S, Kim JM, Kwon KS, Jung JU, Galas D, Serikawa K, Duerr RH, Guthery SL, Peschon J, Hood L, Roach JC, Glusman G. Genomic architecture of inflammatory bowel disease in five families with multiple affected individuals. Hum Genome Var. 2016 Jan 7;3:15060. doi: 10.1038/hgv.2015.60. eCollection 2016. PubMed 27081563 ↗
  • Jostins L, Ripke S, Weersma RK, Duerr RH, McGovern DP, Hui KY, Lee JC, Schumm LP, Sharma Y, Anderson CA, Essers J, Mitrovic M, Ning K, Cleynen I, Theatre E, Spain SL, Raychaudhuri S, Goyette P, Wei Z, Abraham C, Achkar JP, Ahmad T, Amininejad L, Ananthakrishnan AN, Andersen V, Andrews JM, Baidoo L, Balschun T, Bampton PA, Bitton A, Boucher G, Brand S, Buning C, Cohain A, Cichon S, D'Amato M, De Jong D, Devaney KL, Dubinsky M, Edwards C, Ellinghaus D, Ferguson LR, Franchimont D, Fransen K, Gearry R, Georges M, Gieger C, Glas J, Haritunians T, Hart A, Hawkey C, Hedl M, Hu X, Karlsen TH, Kupcinskas L, Kugathasan S, Latiano A, Laukens D, Lawrance IC, Lees CW, Louis E, Mahy G, Mansfield J, Morgan AR, Mowat C, Newman W, Palmieri O, Ponsioen CY, Potocnik U, Prescott NJ, Regueiro M, Rotter JI, Russell RK, Sanderson JD, Sans M, Satsangi J, Schreiber S, Simms LA, Sventoraityte J, Targan SR, Taylor KD, Tremelling M, Verspaget HW, De Vos M, Wijmenga C, Wilson DC, Winkelmann J, Xavier RJ, Zeissig S, Zhang B, Zhang CK, Zhao H; International IBD Genetics Consortium (IIBDGC); Silverberg MS, Annese V, Hakonarson H, Brant SR, Radford-Smith G, Mathew CG, Rioux JD, Schadt EE, Daly MJ, Franke A, Parkes M, Vermeire S, Barrett JC, Cho JH. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature. 2012 Nov 1;491(7422):119-24. doi: 10.1038/nature11582. PubMed 23128233 ↗

Individual participant data

Plan to share: Undecided — After publishing the results, any data sharing request from other researchers will be positively considered. But extent of sharing is not decided yet.

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Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Feb 20, 2020, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT03515070
Lead sponsor
Kyunghee University Medical Center
Responsible party
Chang Kyun Lee (Professor, Kyunghee University Medical Center) — Principal investigator
First posted
May 3, 2018
Start date
May 9, 2018
Primary completion
Sep 30, 2019
Completion
Dec 30, 2019
Last update
Feb 20, 2020

Study contacts

Hyo Jong Kim, M.D. PhD
principal investigator · Kyung Hee University Hospital
Chang Kyun Lee, M.D. PhD
principal investigator · Kyung Hee University Hospital

Oversight

Data monitoring committee
Yes
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

Not currently enrolling

This study is completed, as verified in Feb 2020. You cannot join it, but the record below documents what was studied.

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