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Not yet recruitingNCT07925424Updated Nov 9, 2026

Study on the Efficacy and Safety of Fecal Microbiota Transplantation (FMT) in the Treatment of Functional Gastrointestinal Disorders

An interventional study of Fecal microbiota transplantation (oral capsule) and Fecal microbiota transplantation (nasojejunal tube) in Functional Gastrointestinal Disorders, sponsored by Zhongshan Hospital Xiamen University. Not yet recruiting. Open to participants aged 18 Years to 65 Years. Per ClinicalTrials.gov, last updated 2026-11-09.

Sponsored by Zhongshan Hospital Xiamen University · Not applicable, Interventional, and Treatment

Updated Nov 9, 2026Newly registeredGo to Updates ↓
Phase
Not applicable
Study type
Interventional
Enrollment
200
Allocation
Randomized
Ages
18 Years to 65 Years
Sex
All
01

Study summary

This study is designed to explore the efficacy and safety of fecal microbiota transplantation (FMT) with different delivery routes for patients with functional gastrointestinal disorders (FGIDs). The response to FMT varies greatly, which is related to donor selection, administration route, individual patient characteristics and microbiota compatibility. This single-center, prospective randomized controlled trial plans to enroll 200 FGID patients refractory to conventional medications from OCT 2026 to OCT 2029. Eligible participants will be randomized into a conventional medication group or an FMT group; the FMT group will be further randomized into three subgroups according to transplantation routes: oral capsule, nasojejunal tube and colonoscopic administration. Clinical data, laboratory, imaging and endoscopic results will be collected. Gut microbiota and metabolites will be analyzed before and after treatment. Clinical efficacy and safety will be evaluated at week 12.

02

Conditions studied

  • Functional Gastrointestinal Disorders

Keywords

  • Fecal Microbiota Transplantation
  • Functional Gastrointestinal Disorders
  • Gut Microbiota
  • Randomized Controlled Trial
03

In context

Gastrointestinal Diseases

548 studies on the registry are indexed under Gastrointestinal Diseases; 101 are open to participants now.

This study's planned enrollment of 200 is above the median of 80 across 388 interventional studies indexed under Gastrointestinal Diseases.

Browse Gastrointestinal Diseases studies →

Lead sponsor

Zhongshan Hospital Xiamen University is the lead sponsor of 22 studies on the registry; 6 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years to 65 Years
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • 1: Aged 1865 years, regardless of gender;

    2: Meeting the Rome IV diagnostic criteria (independently confirmed by two physicians with associate-senior title or above), including subtypes of irritable bowel syndrome: IBS-D (diarrhea-predominant), IBS-C (constipation-predominant), and IBS-M (mixed-type).

    3: Patients with functional constipation (excluding defecatory disorder-related constipation), functional diarrhea, or functional bloating, who have poor response to or intolerance of at least one conventional pharmacotherapy (e.g., antispasmodics, antidiarrheals, osmotic laxatives), with a disease duration of ≥6 months.

    4: Voluntarily participating in this study, signing a written form, and committing to comply with the study protocol.

Exclusion criteria

Exclusion Criteria:

  • 1: History of prior colectomy or planned surgery within 6 months

    2: to colonoscopy (severe luminal stenosis, toxic megacolon, risk of perforation, etc.)

    3: comorbid diagnoses: uncontrolled infectious enteritis, positive Clostridioides difficile test, intestinal ischemia, radiation colitis, active diverticular disease

    4: ast or present history of active tuberculosis, active / / infection opportunistic infections

    5: severe systemic diseases: decompensated liver cirrhosis, Class Ⅲ-Ⅳ heart failure, renal insufficiency (\<30 ml/min)

    6: concomitant malignant tumor or lymphoma

    7: severe immunodeficiency or long-term use of or systemic .

    8: Pregnancy, lactation, or planned pregnancy within 6 months

    9: allergy to FMT or study-related medications (laxatives, PPIs, etc.);

    10: poor compliance, psychiatric disorders,or any other conditions deemed by investigators to render the subject unsuitable for participation in the study.

Terms in these criteria, in plain language(9)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

Contraindication

A reason a treatment, test or procedure should not be given to a particular person, such as an allergy, another illness or a medicine they take.

Hepatitis B tests

Hepatitis B is a virus that infects the liver. These are separate tests: HBsAg positive usually means a current infection (a recent vaccination can briefly cause it too); total anti-HBc (HBcAb) positive means an infection now or in the past; HBV DNA measures how much virus is in the blood.

Some studies accept a past infection if HBV DNA is undetectable, sometimes with antiviral medicine during the study. Check what this study allows.

Hepatitis C tests

Hepatitis C is a virus that infects the liver. An HCV antibody test can stay positive after an infection has cleared (and is occasionally positive without one); an HCV RNA test shows whether the virus is there now.

After treatment, hepatitis C counts as cured when HCV RNA is still undetectable 12 weeks or more after the treatment ended. Studies often accept people cured this way.

HIV

The human immunodeficiency virus, which weakens the immune system.

Many studies now accept people whose HIV is controlled on treatment, judged by the viral load and the CD4 count. Check the limits this study sets.

NYHA class (heart failure)

The New York Heart Association’s four classes of how much heart failure limits physical activity.

I
No limits: ordinary activity causes no undue tiredness or breathlessness.
II
Slight limits: comfortable at rest, ordinary activity causes symptoms.
III
Marked limits: comfortable at rest, less than ordinary activity causes symptoms.
IV
Symptoms even at rest; any activity makes them worse.

Studies set their own limit — many outside heart failure leave out class III–IV, while heart failure studies may ask for a particular class. Check the class this study names.

GFR and eGFR (kidney filtering)

GFR (glomerular filtration rate) is how much blood the kidneys filter each minute. It is usually estimated from a blood test — eGFR, by formulas such as CKD-EPI or MDRD — and some studies ask for it to be measured directly instead. Usually given in mL/min/1.73 m².

Check the method, the units and the minimum the study states. A value of 90 or above is in the normal-or-high range, but kidney damage can show in other tests too.

Immunosuppression

A weakened immune system. It can come from an illness, such as HIV or some blood cancers, or from medicines that turn the immune system down, for example after an organ transplant or for an autoimmune disease; steroids at higher doses count.

Read whether the line is about a condition or about medicines, and which medicines and doses it means.

Corticosteroids (steroids)

Anti-inflammatory medicines such as prednisone, prednisolone and dexamethasone — not the anabolic steroids used for muscle.

Studies differ in what they allow: check which steroid medicines, routes (tablets, injections, creams, inhalers, eye drops) and doses this study accepts.

05

Study design

Phase
Not applicable
Primary purpose
Treatment
Allocation
Randomized
Intervention model
Parallel assignment
Masking
None (open label)
Enrollment
200 participants (estimated)

Study arms

  • Experimental
    Oral capsule FMT group

    Fecal microbiota transplantation via oral capsule combined with conventional symptomatic treatment for functional gastrointestinal disorders.

    Biological: Fecal microbiota transplantation (oral capsule)

  • Experimental
    Nasojejunal tube FMT group

    Fecal microbiota transplantation delivered through nasojejunal tube combined with conventional symptomatic treatment for functional gastrointestinal disorders.

    Biological: Fecal microbiota transplantation (nasojejunal tube)

  • Experimental
    Colonoscopic FMT group

    Fecal microbiota transplantation administered by colonoscopic catheter combined with conventional symptomatic treatment for functional gastrointestinal disorders.

    Biological: Fecal microbiota transplantation (colonoscopic catheter)

  • Active comparator
    Conventional medication group

    Routine symptomatic drug treatment for functional gastrointestinal disorders without fecal microbiota transplantation.

    Drug: Conventional symptomatic medications

Interventions

  • BiologicalFecal microbiota transplantation (oral capsule)

    FMT prepared from screened donor stool, administered by oral capsules, combined with conventional symptomatic treatment.

  • BiologicalFecal microbiota transplantation (nasojejunal tube)

    FMT prepared from screened donor stool, infused via nasojejunal tube, combined with conventional symptomatic treatment.

  • BiologicalFecal microbiota transplantation (colonoscopic catheter)

    FMT prepared from screened donor stool, delivered through colonoscopic catheter, combined with conventional symptomatic treatment.

  • DrugConventional symptomatic medications

    Routine symptomatic drugs for functional gastrointestinal disorders, without fecal microbiota transplantation.

06

What researchers measure

Primary outcomes

  1. Clinical response rate at week 12

    The proportion of participants achieving clinical response (≥50% reduction in symptom score). Compare treatment responses across FGID subtypes (IBS-C, IBS-D, mixed IBS, functional constipation, functional diarrhea, functional bloating), and compare efficacy among three FMT administration routes.

    Time frame: 12 weeks after enrollment

Secondary outcomes

  1. Adverse events of FMT

    The type, frequency and severity of adverse events during transplantation, within 4 weeks (short-term) and within 12 weeks (long-term) after transplantation; compare route-related safety risks.

    Time frame: From FMT initiation to week 12

  2. Change in quality of life assessed by the Irritable Bowel Syndrome Quality of Life (IBS-QOL) questionnaire

    The Irritable Bowel Syndrome Quality of Life (IBS-QOL) questionnaire, ranging from 0 to 100. Higher scores indicate worse quality of life. Assessments will be performed at baseline and week 12.

    Time frame: Baseline, week 12

  3. Change in gut microbial alpha-diversity

    Gut microbial alpha-diversity (e.g., Shannon index, Chao1 index). Fecal samples will be collected for 16S rRNA sequencing.

    Time frame: Baseline, week 12

  4. Change in quality of life assessed by the Patient Assessment of Constipation Quality of Life (PAC-QOL) questionnaire

    The Patient Assessment of Constipation Quality of Life (PAC-QOL) questionnaire, ranging from 0 to 112. Higher scores indicate worse quality of life. Assessments will be performed at baseline and week 12.

    Time frame: Baseline, week 12

  5. Change in gut microbial beta-diversity

    Gut microbial beta-diversity, reflecting overall dissimilarity of microbial community composition. Fecal samples will be collected for 16S rRNA sequencing.

    Time frame: Baseline, week 12

  6. Changes in relative abundance of beneficial taxa and microbiota engraftment

    Relative abundance of beneficial bacterial taxa and the degree of microbiota engraftment toward donor microbial profiles. Fecal samples will be collected for 16S rRNA sequencing.

    Time frame: Baseline, week 12

07

Study locations

No study locations are listed for this record.

08

References and documents

Individual participant data

Plan to share: No

No publications or documents are linked to this record.

09

Updates

1 registry update since Sep 25, 2026
Registered
First appeared on the registry. No changes since
Nov 9, 2026
Show all 1 update
  1. Nov 9, 2026
    First appeared on the registry

From the registry record's own update history. This site started tracking changes on Sep 25, 2026; for anything earlier, see the record history on ClinicalTrials.gov ↗

10

Registry details

Key details

Study ID
NCT07925424
Lead sponsor
Zhongshan Hospital Xiamen University
Responsible party
Sponsor
First posted
Nov 9, 2026
Start date
Nov 10, 2026 (estimated)
Primary completion
Oct 1, 2029 (estimated)
Completion
Oct 1, 2029 (estimated)
Last update
Nov 9, 2026

Study contacts

Yanyun Fan, PhD
Contact
fanyanyun@xmu.edu.cn
+86 592 2291429

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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