ClinicalTrials.gg
RecruitingNCT06333405Updated Nov 5, 2026

Fecal Microbiota Transplantation (FMT) as a Prophylaxis of Necrotizing Enterocolitis (NEC) - Clinical Study

An interventional study of Fecal Microbiota Transplantation in Necrotizing Enterocolitis (NEC) and Necrotizing Enterocolitis of Newborn, sponsored by Medical University of Warsaw. Recruiting at 1 site in Poland. Open to participants aged 24 Weeks to 36 Weeks. Per ClinicalTrials.gov, last updated 2026-11-05.

Sponsored by Medical University of Warsaw · Not applicable, Interventional, and Prevention

From the registry’s dates

  • Started Feb 2026; still recruiting 9 months later.
Updated Nov 5, 2026Now RecruitingSite recruiting status changed+6 moreGo to Updates ↓
Phase
Not applicable
Study type
Interventional
Enrollment
40
Allocation
Randomized
Ages
24 Weeks to 36 Weeks
Sex
All
01

Study summary

The aim of the study is to assess the safety of fecal microbiota transplantation (FMT) as a preventive method for the development of Necrotizing enterocolitis (NEC) in a group of premature infants.

This is the first stage of a clinical trial testing the effectiveness of FMT in NEC, the aim of which is to examine the safety profile and analyze all side effects.

Read the detailed description

Necrotizing enterocolitis (NEC) is an inflammatory disease with an incidence of about 1 in 1,000 live births, much higher in premature and low birth weight newborns. Mortality in this disease reaches about 15-30% and has remained stable for many years. Intestinal dysbiosis is an important element of the pathogenesis of this disease and for this reason, experimental models have been used to administer fecal microbiota transplantation (FMT) for prophylaxis and treatment of NEC with very satisfactory results. The aim of the study is to investigate the safety of FMT in the prophylaxis of NEC in premature neonates.

FMT preparation will be prepared specifically for this study by the Human Biome Institute (HBI), with which a scientific collaboration has been established for this experiment. The donors of the material from which the FMT will be prepared will be women in the third trimester of pregnancy who will consent to the collection the material from them, and who will pass a detailed health questionnaire and medical and additional examinations in accordance with the donor qualification protocol according to international recommendations in the method and the procedure developed by the HBI (Human Biome Institute).

During this interventional, prospective, double arm, open-label study, the investigators will collect the information about the safety of FMT in the prophylaxis of NEC.

The project protocol is based on the intervention (fecal microbiota transplantation; FMT) as a deep rectal infusion, via Foley's catheter inserted under ultrasound control. The procedure will be conducted twice, 6 hours apart, between 3 and 6 days after birth and/or up to 14 days, to participants who have transient contraindications to FMT or to participants who will be referred for treatment at our facility from an outpatient facility.

After the procedure, the participants will be closely monitored for adverse reactions up to the discharge from the hospital.

02

Conditions studied

  • Necrotizing Enterocolitis (NEC)
  • Necrotizing Enterocolitis of Newborn

Keywords

  • fecal microbiota transplantation
  • necrotizing enterocolitis prophylaxis
03

In context

Enterocolitis, Necrotizing

228 studies on the registry are indexed under Enterocolitis, Necrotizing; 44 are open to participants now.

This study's planned enrollment of 40 is below the median of 103 across 127 interventional studies indexed under Enterocolitis, Necrotizing.

Browse Enterocolitis, Necrotizing studies →

Lead sponsor

Medical University of Warsaw is the lead sponsor of 326 studies on the registry; 87 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

The criteria were revised on the registry on Nov 5, 2026. See what changed

Ages eligible
24 Weeks to 36 Weeks
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Preterm infants hospitalized in the intensive care unit and neonatal pathology unit during the study period

    1. 1. Born naturally or by cesarean section between:

      1. 24 0/7 and 36 6/7 weeks of gestation
    2. Age >48 hours, a minimum of 24 hours after completion of antibiotic therapy and up to day 14 for newborns \<35 weeks of gestation and up to day 6 for newborns >35 weeks of gestation
    3. Newborns born in and out of hospital
    4. Parental consent to participate in the study

Exclusion criteria

Exclusion Criteria:

  1. Occurrence of congenital defects of the gastrointestinal tract preventing proper intestinal passage (esophageal atresia, duodenal atresia, rectal atresia, tracheo-esophageal fistulas) and occurrence of genetic diseases diagnosed prenatally or at birth (trisomies, other genetic syndromes).
  2. Gastrointestinal perforation
  3. Food allergy with anaphylactic shock
  4. Participation in another clinical trial that may affect the final outcome of the planned intervention

Temporary exclusion criteria

If at least 1 of the following occurs before FMT and up to 14 days of age:

  1. Intolerance to oral feeding, based on the assessment of the qualifying physician on the day of FMT:

    • painful bloating in the abdomen and/or visible bowel loops, blood in the stools,
    • delayed gastric emptying: two consecutive episodes exceeding >50% of the volume of the previous serving, 2 or more consecutive episodes of retention / vomiting / regurgitation of biliary contents / duodenal contents/ blood - episodes not related to anxiety, delayed bowel movements, possibility of swallowing blood during childbirth or from damaged nipples, abnormality of the positioning of gastric tube, bleeding from the nose
  2. Suspected NEC:

    • clinical signs typical for NEC - Bell criteria, redness/bruising of the anterior abdominal wall, palpable abdominal resistance, hypotension; laboratory signs: hyponatraemia, metabolic acidosis, thrombocytopenia, increased inflammation parameters)
  3. Antibiotic therapy during planned FMT treatment
  4. Clinical signs of infection or significantly elevated inflammatory parameters - If at least one of the following clinical signs and/or more than 1 laboratory sign occurs:

    • Clinical signs of infection: Hemodynamic instability (hypotension, tachycardia, peripheral circulatory disturbances (by age standards), thermoregulatory disturbances, fever>38 deg C, hypothermia \<36 deg C) Apathy, lethargy, convulsions Apneas, deterioration of respiratory capacity
    • Laboratory signs of infection:

    Elevated inflammatory parameters:

    • leukocytosis \<5 i >30x109/L up to 48 hours of life (HoL) and \<5 i >20x109/L >48 hours of life, the band neutrophil : total neutrophil (I:T) ratio of >0.2 for >34 weeks of gestation and >0,16 for \<34 weeks of gestation
    • CRP (C-reactive protein) level >0.05mg/l (at the norm up to \<0.05-1mg/l),
    • PCT (procalcitonin) level (>72 HoL) > 0,5-1ng/ml (at the norm up to > 0,5-1ng/ml); count \< 50 thousand, coagulopathy positive cultures of normally sterile body fluids

      • Radiological evidence of infection, including systemic e. g. gallbladder bed swelling, unexplained sudden echocardiographic pulmonary hypertension
Terms in these criteria, in plain language(1)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Platelets

Blood cells that help blood clot. Too few raises the risk of bleeding and bruising. A usual adult range is about 150–400 × 10⁹/L (150,000–400,000 per µL); each lab has its own reference range.

05

Study design

Phase
Not applicable
Primary purpose
Prevention
Allocation
Randomized
Intervention model
Parallel assignment
Masking
None (open label)
Enrollment
40 participants (estimated)

Study arms

  • Experimental
    Experimental: Fecal Microbiota Transplantation

    Drug: Fecal Microbiota Transplantation

  • No intervention
    Control

    Matched Patients without intervention

Interventions

  • DrugFecal Microbiota Transplantation

    Procedure: Fecal Microbiota Transplantation Fecal Microbiota as a suspension obtained from healthy unrelated donor (woman in 3rd trimester of pregnancy) introduced two times per treatment: * as a deep rectal infusion, via Foley's catheter inserted under ultrasound control, twice 6 hours apart, between 3 and 6 days after birth and/or up to 14 days * Other Names: MBiotix HBI

06

What researchers measure

Primary outcomes

  1. Adverse reactions monitoring

    The safety of the procedure will be assessed on the basis of: 1. number of episodes of oral feeding intolerance, diarrhoea, blood/mucus/pus in stools 2. appearance of symptoms of infection or significant change in vital parameters (heart rate ECG and oxygen saturation - continuous measurement, blood pressure 4x/day, temperature, possibly HERO) 3. number of developed NEC 4. assessment of blood flow in the upper mesenteric artery by ultrasound 5. observation of other symptoms - convulsions, unbridled crying, anxiety 6. the number of positive blood cultures, the percentage of antibiotic therapy 7. number of serious side effects - death, serious threat to health and/or life and/or deterioration of health 8. Length of hospitalization

    Time frame: Up to the discharge from the hospital (approximately from 2 weeks to 3 months)

07

Study locations

1 of 1 sites recruiting
08

References and documents

Publications

  • Prado C, Michels M, Avila P, Burger H, Milioli MVM, Dal-Pizzol F. The protective effects of fecal microbiota transplantation in an experimental model of necrotizing enterocolitis. J Pediatr Surg. 2019 Aug;54(8):1578-1583. doi: 10.1016/j.jpedsurg.2018.10.045. Epub 2018 Oct 22. PubMed 30414693 ↗
  • Liu J, Miyake H, Zhu H, Li B, Alganabi M, Lee C, Pierro A. Fecal microbiota transplantation by enema reduces intestinal injury in experimental necrotizing enterocolitis. J Pediatr Surg. 2020 Jun;55(6):1094-1098. doi: 10.1016/j.jpedsurg.2020.02.035. Epub 2020 Feb 26. PubMed 32234317 ↗
  • Li X, Li X, Shang Q, Gao Z, Hao F, Guo H, Guo C. Fecal microbiota transplantation (FMT) could reverse the severity of experimental necrotizing enterocolitis (NEC) via oxidative stress modulation. Free Radic Biol Med. 2017 Jul;108:32-43. doi: 10.1016/j.freeradbiomed.2017.03.011. Epub 2017 Mar 16. PubMed 28323128 ↗
  • Hui Y, Vestergaard G, Deng L, Kot WP, Thymann T, Brunse A, Nielsen DS. Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs. NPJ Biofilms Microbiomes. 2022 Jun 9;8(1):48. doi: 10.1038/s41522-022-00310-2. PubMed 35680942 ↗
  • Korpela K, Helve O, Kolho KL, Saisto T, Skogberg K, Dikareva E, Stefanovic V, Salonen A, Andersson S, de Vos WM. Maternal Fecal Microbiota Transplantation in Cesarean-Born Infants Rapidly Restores Normal Gut Microbial Development: A Proof-of-Concept Study. Cell. 2020 Oct 15;183(2):324-334.e5. doi: 10.1016/j.cell.2020.08.047. Epub 2020 Oct 1. PubMed 33007265 ↗
  • Ma X, Xu T, Qian M, Zhang Y, Yang Z, Han X. Faecal microbiota transplantation alleviates early-life antibiotic-induced gut microbiota dysbiosis and mucosa injuries in a neonatal piglet model. Microbiol Res. 2022 Feb;255:126942. doi: 10.1016/j.micres.2021.126942. Epub 2021 Dec 10. PubMed 34915267 ↗
  • Bieganska EA, Wolski M, Zarlenga M, Bilinski J, Kosinski P. Fecal Microbiota Transplantation (FMT) as a Prophylaxis of Necrotizing Enterocolitis (NEC)-Protocol for a Safety Study. Pharmaceuticals (Basel). 2026 Mar 9;19(3):437. doi: 10.3390/ph19030437. PubMed 41901284 ↗

Individual participant data

Plan to share: No

09

Timeline

1 registry update since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reachedDate before it movedWhere the date was before it movedSimilar studies: half by the dot; the band is the middle halfHalf of similar studies reached it by the dot; the band is the middle half, from a quarter to three quarters

Started Feb 2026 (actual). Primary completion is estimated for Oct 2027, 20 months after the start.

Of 33 interventional studies with no phase under Enterocolitis, Necrotizing, half reached primary completion within 39 months of starting (the median), counting those still running; a quarter within 16 and three quarters within 59. This study's planned 20 months is below that.

Since we started tracking on Sep 25, 2026, the dates moved once, on Nov 5, 2026: start May 2024 → Feb 2026, primary completion Jan 2025 → Oct 2027 and completion Jan 2025 → Oct 2027.

Earlier changes are on the record history on ClinicalTrials.gov ↗

How these figures are worked out, and which studies are left out of them.

Registered
Mar 20, 2024
First posted
Mar 27, 2024
StartActual
Feb 1, 2026was May 2024
Primary completionEst.
Oct 30, 2027was Jan 2025
CompletionEst.
Oct 30, 2027was Jan 2025
Last update
Nov 5, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
Status
Not yet recruiting→Recruiting
changed Nov 5, 2026
Sites
Medical University of Warsaw, Pediatric Surgery Clinic is now Recruiting
Nov 5, 2026
Start date
May 1, 2024→Feb 1, 2026 (actual)
Nov 5, 2026
Primary completion
Jan 31, 2025→Oct 30, 2027
Nov 5, 2026
Study completion
Jan 31, 2025→Oct 30, 2027
Nov 5, 2026
Enrollment
20→40
Nov 5, 2026
Eligibility
3 exclusion criteria edited
What changed in the criteria
Exclusion criteria
  • EditedLabolatoryLaboratory signs of infection:
  • EditedCRP (C-reactive protein) level >0.05mg/l (at the norm up to <0.05-1mg/l),
  • EditedPCT (procalcitonin) level (>72 HoL) > 0,5-1ng/ml (at the norm up to > 0,5-1ng/ml); Platelet count < 50K50 thousand, coagulopathy positive cultures of normally sterile body fluids
Nov 5, 2026
Interventions
Arms added: Control
Nov 5, 2026
Publications
1 publication citing this study linked from PubMed, e.g. PubMed 41901284 ↗
Nov 5, 2026
Show all 1 update
  1. Nov 5, 2026
    Not yet recruiting→Recruiting
    Publications 1 publication citing this study linked from PubMed, e.g. PubMed 41901284 ↗
    Medical University of Warsaw, Pediatric Surgery Clinic is now Recruiting
    Start date May 1, 2024→Feb 1, 2026 (now actual)
    Primary completion Jan 31, 2025→Oct 30, 2027
    Study completion Jan 31, 2025→Oct 30, 2027
    Enrollment 20→40
    Eligibility 3 exclusion criteria edited
    What changed in the criteria
    Exclusion criteria
    • EditedLabolatoryLaboratory signs of infection:
    • EditedCRP (C-reactive protein) level >0.05mg/l (at the norm up to <0.05-1mg/l),
    • EditedPCT (procalcitonin) level (>72 HoL) > 0,5-1ng/ml (at the norm up to > 0,5-1ng/ml); Platelet count < 50K50 thousand, coagulopathy positive cultures of normally sterile body fluids
    Interventions Arms added: Control
    + 5 other changes: index terms, verification date, description, conditions and design details

From the registry record's own update history. This site started tracking changes on Sep 25, 2026; for anything earlier, see the record history on ClinicalTrials.gov ↗

10

Registry details

Key details

Study ID
NCT06333405
Responsible party
Sponsor
First posted
Mar 27, 2024
Start date
Feb 1, 2026
Primary completion
Oct 30, 2027 (estimated)
Completion
Oct 30, 2027 (estimated)
Last update
Nov 5, 2026

Study contacts

Marek Wolski, MD, PhD
Contact
marek.wolski@wum.edu.pl
665578922 ext. +48
Ewa A Begańska, MD
Contact
ewa.bieganska@wum.edu.pl
692542543 ext. +48

Oversight

FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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