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CompletedNCT05816577SECONIUpdated May 23, 2024

Safety and Viability of an E. Coli Nissle Colibactin Knockout in Healthy Volunteers

A Phase 1 interventional study of EcN Colibactin knockout and E Coli Nissle in Diabetes, sponsored by Max Nieuwdorp. Completed at 1 site in Netherlands. Open to participants aged 18 Years to 65 Years, including healthy volunteers. Per ClinicalTrials.gov, last updated 2024-05-23.

Sponsored by Max Nieuwdorp · Phase 1, Interventional, and Treatment

Phase
Phase 1
Study type
Interventional
Enrollment
20
Allocation
Randomized
Ages
18 Years to 65 Years
Sex
All
01

Study summary

E. coli Nissle (EcN) is a well-established human probiotic. However, it has been found that it produces colibactin, linked to colorectal cancer. In this safety trial, the safety and properties of a novel, colibactin-knockout EcN strain (EcNΔClbP) is investigated.

Read the detailed description

In this randomised controlled intervention study, the investigators will compare EcN vs. EcN colibactin-knockout (EcNΔClbP), given once daily for 7 days, in a population of healthy individuals. Safety will be established using adverse event reporting, study visits and laboratory parameters. Pharmacokinetics will be established at the beginning and the end of the study. EcN/EcNΔClbP gut engraftment properties and effects on gut microbiome composition will be assessed using fecal analyses (qPCR, shotgun metagonmics). In addition, effects on glucose homeostasis will be studied using continuous glucose monitoring.

02

Conditions studied

  • Diabetes

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Keywords

  • advanced microbiome therapeutics
  • diabetes
  • safety
03

In context

Diabetes Mellitus

11,090 studies on the registry are indexed under Diabetes Mellitus; 1,319 are open to participants now.

This study's enrollment of 20 is below the median of 80 across 8,491 interventional studies indexed under Diabetes Mellitus.

Browse Diabetes Mellitus studies →

Lead sponsor

Max Nieuwdorp is the lead sponsor of 3 studies on the registry; 2 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years to 65 Years
Sexes eligible
All
Accepts healthy volunteers
Yes

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Healthy male or female of Caucasian descent

    • If female, postmenopausal
  • Age: 18-65 years old
  • BMI: 18-25 kg/m2
  • Subjects should be able to give informed consent

Exclusion criteria

Exclusion Criteria:

  • Use of any systemic medication (except for paracetamol), including proton pump inhibitors, antibiotics and pro-/prebiotics in the past three months or during the study period.
  • Use of the EcN probiotic strain (Mutaflor®) in the past 12 months.
  • (Expected) prolonged comprised immunity (e.g. due to recent cytotoxic chemotherapy or human immunodeficiency viruses (HIV) infection with a CD4-T cell count \< 240/mm3).
  • History of moderate to severe disease of the digestive tract, such as celiac disease, chronic diarrhoea (≥3 stools/day for >4 weeks), chronic obstipation (\<2 defecations/week for >3 months), Irritable Bowel Syndrome (IBS) (according to Rome IV criteria) or Inflammatory Bowel Disease (IBD).
  • Any gastro-intestinal disorder within the past 6 months
  • Smoking or illicit drug use (e.g. amphetamine/cocaine/heroin/GHB) in the past three months or use during the study period.
  • Use of >21 units of alcohol per week on average in the past three months or use of >2 units of alcohol during the study period.
  • Simultaneous participation in other studies
05

Study design

Phase
Phase 1
Primary purpose
Treatment
Allocation
Randomized
Intervention model
Parallel assignment
Masking
Triple (Participant, Care provider, Investigator)
Enrollment
20 participants (actual)

Study arms

  • Active comparator
    EcN

    E Coli Nissle wildtype 10\^11 once daily for 7 days

    Dietary Supplement: E Coli Nissle

  • Experimental
    EcN colibactin-knockout

    EcN colibactin-knockout 10\^11 once daily for 7 days

    Dietary Supplement: EcN Colibactin knockout

Interventions

  • Dietary supplementEcN Colibactin knockout

    E coli Nissle strain with ClbP-gene removed and therefore not producing colibactin

  • Dietary supplementE Coli Nissle

    E Coli wildtype strain

06

What researchers measure

Primary outcomes

  1. Adverse events

    The number, duration and severity of adverse reactions to assess the safety/tolerability of the EcNΔClbP strain compared to the wild type strain.

    Time frame: 3 weeks

  2. CRP

    Changes in CRP (mg/L)

    Time frame: Weekly, during 3 weeks

  3. Leucocytes

    Changes in leucocytes (10\^9/L)

    Time frame: Weekly, during 3 weeks

  4. Renal function

    Changes in renal function, expressed as kreatinin levels (micromol/L) throughout the study

    Time frame: Weekly, during 3 weeks

  5. Bilirubin

    Changes in bilirubin in micromol/L throughout the study

    Time frame: Weekly, during 3 weeks

  6. alkaline phosphatase

    Changes in alkaline phosphatase in U/L throughout the study

    Time frame: Weekly, during 3 weeks

  7. gamma-GT in U/L

    Changes in gamma-GT in U/L throughout the study

    Time frame: Weekly, during 3 weeks

  8. AST

    Changes in AST in U/L throughout the study

    Time frame: Weekly, during 3 weeks

  9. ALT

    Changes in ALT in U/L throughout the study

    Time frame: Weekly, during 3 weeks

  10. Hemoglobin

    Changes in hemoglobin in mmol/L throughout the study

    Time frame: Weekly, during 3 weeks

  11. trombocytes

    Changes in trombocytes in 10\^9/L throughout the study

    Time frame: Weekly, during 3 weeks

  12. eosinophils

    Changes in eosinophils in 10\^9/L throughout the study

    Time frame: Weekly, during 3 weeks

  13. basophils

    Changes in basophils in 10\^9/L throughout the study

    Time frame: Weekly, during 3 weeks

  14. neutrophils

    Changes in neutrophils in 10\^9/L throughout the study

    Time frame: Weekly, during 3 weeks

  15. monocytes

    Changes in monocytes in 10\^9/L throughout the study

    Time frame: Weekly, during 3 weeks

  16. Lipid profile

    Changes in lipid profile throughout the study

    Time frame: Weekly, during 3 weeks

  17. Homeostatic model of insulin resistance (HOMA-IR)

    Changes in HOMA-IR throughout the study

    Time frame: Weekly, during 3 weeks

  18. Gastro-intestinal quality of life - questionnaire

    Changes in Gastro-intestinal quality of life (GIQLI) score. The maximum score is 155, the minimum score is 31. A higher score represents a better outcome.

    Time frame: Weekly, during 3 weeks

  19. Bristol Stool Chart

    Changes in Bristol Stool Chart score throughout the study. Stools can be scored from 1 (hard stool) to 7 (watery stool). A score of 4 is considered ideal.

    Time frame: Weekly, during 3 weeks

Secondary outcomes

  1. Number of copies of EcN (qPCR)

    Quantification of EcN in faeces samples collected throughout the two weeks via quantitative polymerase chain reaction (qPCR)

    Time frame: Daily during 2 weeks

  2. Microbiome composition

    Comparison of relative abundances of species throughout the study using shotgun metagenomics

    Time frame: Weekly during 3 weeks

Other outcomes

  1. Fecal 24h bile acids

    Changes in 24h faecal bile acids will be measured at V2, V3 and V4.

    Time frame: Weekly during 3 weeks

  2. Fasting blood bile acids

    Changes in fasting plasma bile acids will be measured at V2, V3 and V4.

    Time frame: Weekly during 3 weeks

  3. Fecal 24h short chain fatty acids

    Changes in 24h faecal and fasting and short-chain fatty acids will be measured at V2, V3 and V4.

    Time frame: Weekly during 3 weeks

  4. Fasting blood short chain fatty acids

    Changes in fasting short-chain fatty acids will be measured at V2, V3 and V4.

    Time frame: Weekly during 3 weeks

07

Study locations

1 site
  • Amsterdam UMC location AMC
    Amsterdam, Netherlands
08

References and documents

Individual participant data

Plan to share: No

No publications or documents are linked to this record.

09

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on May 23, 2024, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT05816577
Lead sponsor
Max Nieuwdorp
Responsible party
Max Nieuwdorp (Prof. dr., Amsterdam University Medical Centers (UMC), Location Academic Medical Center (AMC)) — Sponsor-investigator
First posted
Apr 18, 2023
Start date
Sep 18, 2023
Primary completion
Mar 19, 2024
Completion
Mar 19, 2024
Last update
May 23, 2024

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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