ClinicalTrials.gg
TerminatedNCT02788214Updated Dec 19, 2020

Helicobacter Pylori Genome Project (HpGP)

An observational study in Gastric Cancer, Non-Atrophic Gastritis and Intestinal Metaplasia, sponsored by National Cancer Institute (NCI). Terminated at 94 sites in 53 countries. Open to participants aged 30 Years to 70 Years. Per ClinicalTrials.gov, last updated 2020-12-19.

Sponsored by National Cancer Institute (NCI) · Observational

Why this study was terminated
research determined not to be human subject research
Study type
Observational
Model
Case-control
Time perspective
Cross-sectional
Enrollment
1,000
Ages
30 Years to 70 Years
Sex
All
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Study summary

Helicobacter pylori is a common bacterial infection. It can lead to severe stomach problems, including stomach cancer. Researchers want to look at samples of the bacteria. These H. pylori strains will be taken from chronically infected people. They want to identify the genetic and epigenetic differences in H. pylori strains. This could help predict which people who get infected with the bacteria will get stomach cancer. This could lead to the cancer being detected earlier. It could also mean less people get stomach cancer.

Objectives:

To study genetic variations of H. pylori strains based on samples from chronically infected people. To identify the features of strains that might lead to severe stomach problems or stomach cancer.

Eligibility:

People ages 30-70 years who need an upper endoscopy or who were recently diagnosed with stomach cancer

Design:

Participants will be screened by the doctor who does their procedure and a study nurse.

Participants who have endoscopy will have \~6 biopsies removed. These are tissue samples. They are about the size of a grain of rice. Participants will allow the study team to access reports from their stomach exam.

Participants with stomach cancer will donate some of the tissue that will be removed during their clinical care. They will allow the study team to access reports of their surgery. They will also allow them to access the microscope slides of their stomach.

Read the detailed description

Helicobacter pylori, a Gram-negative bacterium associated with a spectrum of benign and malignant gastric conditions, is one of the most genetically variable pathogens. Variations in a few genes have been associated with risk of inflammation and carcinogenesis, but to date no systematic study has evaluated the entire bacterial genome. We propose a multicountry study to establish and analyze an informative international collection of H. pylori clinical isolates from residents of defined geographic areas. Molecular characterization will be conducted at the NCI/DCEG. Our hypothesis is that genetic and epigenetic variations in H. pylori strains among chronically infected individuals may affect risk of progression to gastric cancer. Findings from this study may help to characterize the differential virulence among H. pylori isolates and suggest predictive biomarkers for early diagnosis of cancer. The bacterial isolates and databases from this study will also provide a foundation for further elucidation of H. pylori pathogenesis.

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Conditions studied

  • Gastric Cancer
  • Non-Atrophic Gastritis
  • Intestinal Metaplasia

Browse trials for

Keywords

  • Gastric Cancer
  • Bacterial Risk Factors
  • DNA Methylation
  • DNA Sequencing
  • Biobank
  • Helicobacter pylori
  • SMRT/PacBio
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In context

Stomach Neoplasms

3,399 studies on the registry are indexed under Stomach Neoplasms; 992 are open to participants now.

This study's enrollment of 1,000 is above the median of 278 across 790 observational studies indexed under Stomach Neoplasms.

Browse Stomach Neoplasms studies →

Lead sponsor

National Cancer Institute (NCI) is the lead sponsor of 3,556 studies on the registry; 336 are open to participants now.

Of its 411 completed or terminated interventional studies of FDA-regulated products, 373 (91%) have results posted.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
30 Years to 70 Years
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Non-probability sample

Study population

H. pylori strains from patients with various gastrointestinal diseases.

Eligibility criteria

INCLUSION CRITERIA:

H. pylori strains collected from:

  1. Adult aged 30 to 70 years old.
  2. Patients who need upper endoscopy (examination of the lining of their stomach with a flexible tube).
  3. Patients with stomach cancer.
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Study design

Observational model
Case-control
Time perspective
Cross-sectional
Enrollment
1,000 participants (actual)
Biospecimen retention
Samples with dna

Groups and cohorts

  • Advanced intestinal metaplasia

    H. pylori strains from patients with: * Complete-type intestinal metaplasia with extension to corpus, or * Incomplete-type intestinal metaplasia of any extent

  • Non-atrophic gastritis

    H. pylori strains from patients with non-atrophic gastritis

  • Gastric cancer

    H. pylori strains from patients with gastric cancer

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What researchers measure

Primary outcomes

  1. Bacterial DNA sequence

    genome and methylome

    Time frame: At enrollment

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Study locations

94 sites
  • White River Medical Center
    Batesville, Arkansas, United States
  • Stanford University
    Stanford, California, United States
  • Georgia Cancer Center Biorepository
    Athens, Georgia, United States
  • Centers for Disease Control and Prevention
    Atlanta, Georgia, United States
  • Albert Einstein College of Medicine
    Bronx, New York, United States
  • Vanderbilt University Medical Center
    Nashville, Tennessee, United States
  • Baylor College of Medicine
    Houston, Texas, United States
  • Université Ferhat Abbas
    Sétif, Algeria
  • Hospital Alemán
    Buenos Aires, Argentina
  • Dhaka Medical College and Hospital
    Dhaka, Bangladesh
  • Ghent University
    Ghent, Belgium
  • Universidade Federal de Minas Gerais
    Belo Horizonte, Brazil
  • AC Camargo Cancer Center
    Sao Paulo, Brazil
  • Medical University of Sofia
    Sofia, Bulgaria
  • Tsaritsa Yoanna University Hospital
    Sofia, Bulgaria
  • University of Dschang
    Dschang, Cameroon
  • University of Alberta
    Edmonton, Canada
  • Universidad de Concepción
    Concepción, Chile
  • Hospital Hanga Roa
    Easter Island, Chile
  • Pontificia Universidad Catolica
    Santiago, Chile
  • Instituto Nacional de Cancerología
    Bogotá, Colombia
  • Universidad del Valle
    Cali, Colombia
  • Universidad de Nariño
    Pasto, Colombia
  • University of Kinshasa
    Kinshasa, Congo, The Democratic Republic of the
  • University of Mbuji Mayi
    Mbuji-Mayi, Congo, The Democratic Republic of the
  • Universidad de Costa Rica
    San José, Costa Rica
  • Universidad Autónoma de Santo Domingo
    Santo Domingo, Dominican Republic
  • C.H.U. Pellegrin
    Bordeaux, France
  • Otto-von-Guericke Universitätsklinikum
    Magdeburg, Germany
  • University of Cape Coast
    Cape Coast, Ghana
  • Evangelismos Hospital and Hellenic Pasteur Institute
    Athens, Greece
  • Hellenic Pasteur Institute
    Athens, Greece
  • Universidad San Carlos
    Guatemala, Guatemala
  • Hospital de Occidente
    Santa Rosa De Copán, Honduras
  • National University Hospital
    Reykjavík, Iceland
  • Kasturba Medical College Manipal
    Manipal, India
  • University of Indonesia
    Kota Depok, Indonesia
  • Universitas Airlangga
    Kota Surabaya, Indonesia
  • Digestive Disease Research Institute
    Teheran, Iran, Islamic Republic of
  • Bar Ilan University
    Ramat Gan, Israel
  • Centro di Rferimento Oncologico
    Aviano, Italy
  • Nagoya City University
    Nagoya, Japan
  • HOSEI University
    Tokyo, Japan
  • Kyorin University
    Tokyo, Japan
  • Nippon Medical School
    Tokyo, Japan
  • Oita University
    Ōita, Japan
  • Jordan University of Science and Technology
    Ramtha, Jordan
  • Central Asian Cancer Institute
    Almaty, Kazakhstan
  • Tenwek Hospital
    Bomet, Kenya
  • Seoul National University Bundang Hospital
    Seongnam, Korea, Republic of
  • Chung-Ang University Hospital
    Seoul, Korea, Republic of
  • National Cancer Center
    Seoul, Korea, Republic of
  • Kyrgyz State Medical Academy
    Bishkek, Kyrgyzstan
  • University of Latvia
    Riga, Latvia
  • Lithuanian University of Health Sciences
    Kaunas, Lithuania
  • University of Malaya
    Kuala Lumpur, Malaysia
  • Instituto Nacional de Cancerología
    Mexico City, Mexico
  • Defence Services General Hospital
    Yangon, Myanmar
  • Chitwan Medical College
    Bharatpur, Nepal
  • Tribhuvan University Teaching Hospital
    Kathmandu, Nepal
  • University of Calabar Teaching Hospital
    Calabar, Nigeria
  • University of Nigeria Teaching Hospital
    Enugu, Nigeria
  • Babcock Universtiy Teaching Hospital
    Ilishan-Remo, Nigeria
  • University of Jos / University Teaching Hospital
    Jos, Nigeria
  • Federal Medical Center
    Lagos, Nigeria
  • Instituto Nacional de Enfermedades Neoplasicas
    Lima, Peru
  • Universidad Peruana Cayetano Heredia
    Lima, Peru
  • University of Lublin
    Publin, Poland
  • Wroclaw Medical Center
    Wroclaw, Poland
  • Instituto Nacional de Saúde Dr. Ricardo Jorge
    Lisbon, Portugal
  • University of Porto
    Porto, Portugal
  • University of Puerto Rico
    San Juan, Puerto Rico
  • Clinical Research Center of Moscow
    Moscow, Russian Federation
  • National University Hospital
    Singapore, Singapore
  • Chris Hani Baragwanath Academic Hospital
    Soweto, South Africa
  • Hospital Clinic de Barcelona
    Barcelona, Spain
  • Hospital General de Granollers
    Barcelona, Spain
  • Hospital Universitari Parc Tauli
    Barcelona, Spain
  • Institut d'Investigació Biomédica de Bellvitge (Idibell)
    Barcelona, Spain
  • L'Hospitalet de Llobregat
    Barcelona, Spain
  • Hospital de Leon
    León, Spain
  • Hospital de la Princesa
    Madrid, Spain
  • Hospital General Universitario Gregorio Marañón
    Madrid, Spain
  • Hospital Universitario de Asturias
    Oviedo, Spain
  • Complejo Hospitalario de Navarra
    Pamplona, Spain
  • Hospital Donostia
    San Sebastian, Spain
  • Lozano Blesa University Hospital
    Zaragoza, Spain
  • Sudan University of Science and Technology
    Khartoum, Sudan
  • Karolinska Institutet
    Stockholm, Sweden
  • University of Bern
    Bern, Switzerland
  • University of Zurich
    Zurich, Switzerland
  • National Taiwan University Hospital
    Taipei, Taiwan
  • Istanbul University
    Istanbul, Turkey
  • Cho Ray Hospital
    Ho Chi Minh City, Vietnam
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References and documents

Publications

  • Correa P, Haenszel W, Cuello C, Tannenbaum S, Archer M. A model for gastric cancer epidemiology. Lancet. 1975 Jul 12;2(7924):58-60. doi: 10.1016/s0140-6736(75)90498-5. PubMed 49653 ↗
  • Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk HP, Gill S, Dougherty BA, Nelson K, Quackenbush J, Zhou L, Kirkness EF, Peterson S, Loftus B, Richardson D, Dodson R, Khalak HG, Glodek A, McKenney K, Fitzegerald LM, Lee N, Adams MD, Hickey EK, Berg DE, Gocayne JD, Utterback TR, Peterson JD, Kelley JM, Cotton MD, Weidman JM, Fujii C, Bowman C, Watthey L, Wallin E, Hayes WS, Borodovsky M, Karp PD, Smith HO, Fraser CM, Venter JC. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature. 1997 Aug 7;388(6642):539-47. doi: 10.1038/41483. Erratum In: Nature 1997 Sep 25;389(6649):412. PubMed 9252185 ↗
  • Krebes J, Morgan RD, Bunk B, Sproer C, Luong K, Parusel R, Anton BP, Konig C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S. The complex methylome of the human gastric pathogen Helicobacter pylori. Nucleic Acids Res. 2014 Feb;42(4):2415-32. doi: 10.1093/nar/gkt1201. Epub 2013 Dec 2. PubMed 24302578 ↗

Related links

09

Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reached

Ran from Jul 2016 to primary completion in May 2020, 45 months.

How these figures are worked out, and which studies are left out of them.

Registered
May 28, 2016
First posted
Jun 2, 2016
StartActual
Jul 27, 2016
Primary completionActual
May 15, 2020
CompletionActual
May 15, 2020
Last update
Dec 19, 2020
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Dec 19, 2020, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT02788214
Collaborators
New England Biolabs, USA, National Institute of Infectious Diseases, Japan, National Institute of Genetics, Japan, Chiba University, Japan, National Institute for Basic Biology, Japan, Instituto Mexicano de Seguro Social, Mexico, Universidade de Lisboa, Portugal, Instituto de Biomedicina de Valencia, Spain, University of Bath, UK, Vanderbilt University Medical Center, USA, Karolinska Institutet, University of Tokyo, Japan, Max von Pettenkofer-Institute of Hygiene and Medical Microbiology, Germany, Universidad de Chile, Chile, HOSEI University, Japan
Responsible party
Sponsor
First posted
Jun 2, 2016
Start date
Jul 27, 2016
Primary completion
May 15, 2020
Completion
May 15, 2020
Last update
Dec 19, 2020

Study contacts

Charles S. Rabkin, M.D.
principal investigator · National Cancer Institute (NCI)
M. Constanza Camargo, Ph.D.
principal investigator · National Cancer Institute (NCI)
View the source record on ClinicalTrials.gov ↗

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This study is terminated, as verified in Dec 2020. You cannot join it, but the record below documents what was studied.

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