ClinicalTrials.gg
CompletedNCT02744469BeniDiTUpdated Feb 23, 2021

Benin Population Diversity of Tuberculosis and Implications

An observational study in Tuberculosis, sponsored by Laboratoire de Référence des Mycobactéries. Completed at 26 sites in 2 countries. Open to participants aged 15 Years and older. Per ClinicalTrials.gov, last updated 2021-02-23.

Sponsored by Laboratoire de Référence des Mycobactéries · Observational

Study type
Observational
Model
Cohort
Time perspective
Prospective
Enrollment
1,490
Ages
15 Years and older
Sex
All
01

Study summary

Tuberculosis is a public health problem caused by a microbe. This microbe may differ from one patient to another. The purpose of this study is to know to which extent, each of these various microbes is involved in tuberculosis disease in Benin. This study will also find out whether the type that affects a patient, depends on patient characteristics and whether the difference affects the outcome of the treatment. Finally the study will also help to find out whether diagnostic tests are reliable for all types of the microbe. This information will be used after the study to inform decision making in order to improve tuberculosis control.

Read the detailed description

The overall aim of this study is to determine the population structure of Mycobacterium tuberculosis complex in Benin, and implications for tuberculosis presentation, diagnosis and outcome The primary objective is to compare the characteristics of ancestral lineages of Mycobacterium tuberculosis complex, such as M. africanum West African 1 (Lineage 5), with modern M. tuberculosis in Benin.

This study will build on the system of nationwide surveillance already implemented for retreatment patients and recruit in addition a representative random sample of new patients. So for this study sputa from retreatment patients and from a sample of new patients, from the 24 tuberculosis (TB) clinics (Centres de Diagnostic et de Traitement de la Tuberculose) selected all over the country (Benin), will be shipped from TB clinics to the ''Laboratoire de Référence des Mycobactéries'' (LRM), Cotonou (National Reference Laboratory for Mycobacteria, Cotonou) if they consent. All retreatment patients will be recruited into the study and each 4 new patients detected after detection of a retreatment patient will also be recruited into the study.

At enrolment, a questionnaire will be used to collect from consenting participants information such as: Participant place of residence (rural or urban as determined by population density); ethnic group; age; sex; Human Immuno-deficiency Virus (HIV) status; Bacillus Calmette Guerin (BCG) vaccine scar...

Spoligotype analysis will be used to determine the population structure, as it allows the classification of most Mycobacterium tuberculosis complex isolates in lineages, including strains with single or few copies of IS6110.

The external quality evaluation (assurance quality) of the laboratory analyses to be performed at the LRM (National Reference Laboratory for Mycobacteria) in Cotonou, Benin during the study, will be performed by the Institute of Tropical Medicine of Antwerp in Belgium.

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Conditions studied

  • Tuberculosis

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Keywords

  • Tuberculosis
  • population structure
  • implications
  • lineages
  • spoligotyping
  • sputum
  • resistance
  • culture
  • diagnostics
  • outcome
  • new/retreatment patient
03

In context

Tuberculosis

1,170 studies on the registry are indexed under Tuberculosis; 175 are open to participants now.

This study's enrollment of 1,490 is above the median of 253 across 317 observational studies indexed under Tuberculosis.

Browse Tuberculosis studies →

Lead sponsor

This is the only study on the registry with Laboratoire de Référence des Mycobactéries as lead sponsor.

Counted across the registry records on this site, refreshed daily.

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Who can participate

Ages eligible
15 Years and older
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Probability sample

Study population

There is a National Tuberculosis Program in Benin with a network of 57 TB (tuberculosis) 'diagnosis and treatment centers' (TB clinics). In order to be able to ensure a realistic (cost, time, personnel) strong quality control of data to record on fields in TB clinics, a smaller number of TB clinics where most of Benin TB patients are diagnosed is selected instead of including all the 57 TB clinics. Participants will be recruited from the 4 largest TB clinics of each of Benin's 6 (former) departments (Atlantique/Littoral, Oueme/Plateau, Mono/Couffo, Zou/Collines, Borgou/Alibori, Atacora/Donga), amounting to 24 TB clinics.

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • New or retreatment tuberculosis patients with Acid Fast Bacilli-positive microscopy,
  • Diagnosed in a participating TB clinic of Benin,
  • Aged ≥15 years (Patients aged less than 15 years old will not be included in this study as acid-fast-bacilli microscopy is rarely positive in children)
  • Who has given his/her (if adult potential participant:≥18 years old) OR who has given his/her assent in addition to the informed consent of his/her legal representative (if potential participant aged 15-\<18 years)

Exclusion criteria

Exclusion Criteria:

  • Extra-pulmonary TB only,
  • New patient who has started taking the TB treatment drugs.
  • Retreatment patient who has started taking the TB retreatment drugs.
  • Very low sputum quantity (at least 5 milliliters total sputum is acceptable) and potential participant refusing to give more sputum
Terms in these criteria, in plain language(1)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

Informed consent

Before you join, the study team explains what taking part involves — its purpose, what happens, the risks and possible benefits — and answers your questions, so you can decide freely. Consent is usually recorded on a form (the informed consent form, ICF) signed by you or, where the law allows, by someone legally authorised to decide for you.

You can keep asking questions during the study, you are told of new information that matters, and you can choose to leave at any time.

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Study design

Observational model
Cohort
Time perspective
Prospective
Enrollment
1,490 participants (actual)
Patient registry
No
Biospecimen retention
Samples with dna

Groups and cohorts

  • New patients

    ''New tuberculosis patients'' are patients just diagnosed for tuberculosis, and who were never treated for tuberculosis or who are treated for less than 1 month. In total, 1192 new patients will be recruited.

    Other: No intervention (observational study)

  • Retreatment patients

    ''Retreatment tuberculosis patients'' are patients just diagnosed for tuberculosis and who were previously treated for tuberculosis (for a duration of 1 month at least). This group includes: patients with treatment relapse, failure and patients who return after default. In total, 298 retreatment patients will be recruited.

    Other: No intervention (observational study)

Interventions

  • OtherNo intervention (observational study)
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What researchers measure

Primary outcomes

  1. Lineage

    Mycobacterium tuberculosis lineage as determined by the spoligotyping pattern. The lineage will be determined using the specimen collected at participant enrolment. Spoligotyping will be done on sputum, or on culture isolate if failed on sputum and culture is positive.

    Time frame: At enrollment

Secondary outcomes

  1. Spoligotype (family)

    Mycobacterium tuberculosis spoligotype (family) as determined by the spoligotyping pattern. The lineage will be determined using the specimen collected at participant enrolment.

    Time frame: At enrollment

  2. Treatment failure or success as evidenced by microscopy result (for new and retreatment patients)

    Treatment failure will be ascertained at the end of the treatment period using microscopy for detection of acid-fast bacilli in participant' sputa. Treatment failure or success will be measured using microscopy, only for new and retreatment patients.

    Time frame: At Month 6 for new patient; at Month 8 for retreatment patients

  3. Treatment failure or success as evidenced by culture result (for rifampicin resistant patients)

    Treatment failure will be ascertained at the end of the 20 months treatment period by culturing sputa from rifampicin resistant participants.

    Time frame: At Month 20 for rifampicin resistant patients

  4. Relapse ascertainment (by questioning and retrospective check of microscopy evidence in TB clinics)

    Participants will be called and will be asked whether they have experienced another episode of tuberculosis. This will be retrospectively confirmed in the TB clinic by checking microscopy results for the new episode of tuberculosis.

    Time frame: At Month 18 for new patients; at Month 20 for retreatment patients; at Month 32 for rifampicin resistant patients

  5. Chest X-ray findings

    Chest X-ray will be performed in participants to be enrolled in Cotonou and Porto-Novo, the 2 biggest TB clinics and where X-ray is available.

    Time frame: At enrollment

  6. Culture positivity

    Isolation of mycobacteria (in vitro mycobacterial growth) in culture

    Time frame: At enrollment

  7. Phenotypic Drug-resistance or susceptibility

    Drug resistance as determined using phenotypic drug susceptibility testing on 1st and 2nd line anti-tuberculous drugs

    Time frame: At enrollment (if positive culture)

  8. Genotypic resistance to rifampin (GeneXpert)

    Resistance of Mycobacterium tuberculosis to rifampin as determined using the GeneXpert Mtb/Rif test.

    Time frame: At enrollment

  9. (Phenotypic)Type of Mycobacteria (tuberculous or non-tuberculous)

    Group of Mycobacteria (tuberculous or non-tuberculous) as determined by the result of phenotypic drug sensitivity testing on para-nitro-benzoic acid

    Time frame: At enrollment (if positive culture)

  10. (Mpt64's)Type of Mycobacteria (tuberculous or non-tuberculous)

    Group of Mycobacteria (tuberculous or non-tuberculous) as determined using the Mpt64 antigen test

    Time frame: At enrollment (if positive culture)

Other outcomes

  1. Acid-Fast Bacilli microcopy result

    Acid-Fast Bacilli microcopy result on patients' sputa determined using the Ziehl-Neelsen method or the auramine method depending on which of these methods is used at the various tuberculosis clinics where participants will be enrolled.

    Time frame: 1 Day

  2. Acid-Fast Bacilli microcopy on pooled sputum

    Acid-Fast Bacilli microcopy result on the pooled sputum of each participant. The pooled sputum results from the addition of the 2 leftover routine sputa of a participant to the third sputum given after informed consent. This Acid-Fast Bacilli microcopy on pooled sputum will be done after shipment of the pooled sputum to the Reference Laboratory (LRM), using auramine method.

    Time frame: At enrollment

  3. Drug resistance or susceptibility (Novel diagnostic tests)

    Drug resistance pattern for 1st and 2nd lines drugs using novel diagnostic tests.

    Time frame: At enrollment

07

Study locations

26 sites
  • Institute of Tropical Medicine
    Antwerp, Belgium
  • Centre de Diagnostic et de Traitement de la Tuberculose de Djougou
    Djougou, Atacora/Donga, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Matéri
    Matéri, Atacora/Donga, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Natitingou
    Natitingou, Atacora/Donga, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Tanguiéta
    Tanguiéta, Atacora/Donga, Benin
  • Centre de Diagnostic et de Traitement de la tuberculose d'Abomey-Calavi
    Abomey-Calavi, Atlantique/Littoral, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose d'Allada
    Allada, Atlantique/Littoral, Benin
  • Centre National Hospitalier Universitaire de Pneumo-Phtisiologie de Cotonou
    Cotonou, Atlantique/Littoral 01BP321, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Ouidah
    Ouidah, Atlantique/Littoral, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Bembèrèkè HE
    Bembèrèkè, Borgou/Alibori, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Kandi
    Kandi, Borgou/Alibori, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Nikki Hopital Sounou-Séro
    Nikki, Borgou/Alibori, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Parakou CSCom
    Parakou, Borgou/Alibori, Benin
  • Laboratoire de Référence des Mycobactéries
    Cotonou, Littoral 01BP321, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose d'Aplahoué
    Aplahoué, Mono/Couffo, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Bopa
    Bopa, Mono/Couffo, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Comè
    Comè, Mono/Couffo, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Houéyogbé
    Houéyogbé, Mono/Couffo, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Avrankou
    Avrankou, Oueme/Plateau, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Pobè
    Pobe, Oueme/Plateau, Benin
  • Centre de Pneumo-Phtisiologie d'Akron
    Porto-Novo, Oueme/Plateau, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Sakété
    Sakété, Oueme/Plateau, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose d'Abomey
    Abomey, Zou/Collines, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Bohicon
    Bohicon, Zou/Collines, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Dassa-Zoumè
    Dassa-Zoumè, Zou/Collines, Benin
  • Centre de Diagnostic et de Traitement de la Tuberculose de Zagnanado
    Zagnanado, Zou/Collines, Benin
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References and documents

Publications

  • Affolabi D, Anyo G, Faihun F, Sanoussi N, Shamputa IC, Rigouts L, Kestens L, Anagonou S, Portaels F. First molecular epidemiological study of tuberculosis in Benin. Int J Tuberc Lung Dis. 2009 Mar;13(3):317-22. PubMed 19275790 ↗
  • Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, Allix C, Aristimuno L, Arora J, Baumanis V, Binder L, Cafrune P, Cataldi A, Cheong S, Diel R, Ellermeier C, Evans JT, Fauville-Dufaux M, Ferdinand S, Garcia de Viedma D, Garzelli C, Gazzola L, Gomes HM, Guttierez MC, Hawkey PM, van Helden PD, Kadival GV, Kreiswirth BN, Kremer K, Kubin M, Kulkarni SP, Liens B, Lillebaek T, Ho ML, Martin C, Martin C, Mokrousov I, Narvskaia O, Ngeow YF, Naumann L, Niemann S, Parwati I, Rahim Z, Rasolofo-Razanamparany V, Rasolonavalona T, Rossetti ML, Rusch-Gerdes S, Sajduda A, Samper S, Shemyakin IG, Singh UB, Somoskovi A, Skuce RA, van Soolingen D, Streicher EM, Suffys PN, Tortoli E, Tracevska T, Vincent V, Victor TC, Warren RM, Yap SF, Zaman K, Portaels F, Rastogi N, Sola C. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 2006 Mar 6;6:23. doi: 10.1186/1471-2180-6-23. PubMed 16519816 ↗
  • de Jong BC, Antonio M, Gagneux S. Mycobacterium africanum--review of an important cause of human tuberculosis in West Africa. PLoS Negl Trop Dis. 2010 Sep 28;4(9):e744. doi: 10.1371/journal.pntd.0000744. PubMed 20927191 ↗
  • de Jong BC, Hill PC, Aiken A, Awine T, Antonio M, Adetifa IM, Jackson-Sillah DJ, Fox A, Deriemer K, Gagneux S, Borgdorff MW, McAdam KP, Corrah T, Small PM, Adegbola RA. Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia. J Infect Dis. 2008 Oct 1;198(7):1037-43. doi: 10.1086/591504. PubMed 18702608 ↗
  • de Jong BC, Hill PC, Brookes RH, Otu JK, Peterson KL, Small PM, Adegbola RA. Mycobacterium africanum: a new opportunistic pathogen in HIV infection? AIDS. 2005 Oct 14;19(15):1714-5. doi: 10.1097/01.aids.0000185991.54595.41. No abstract available. PubMed 16184053 ↗
  • Gehre F, Antonio M, Faihun F, Odoun M, Uwizeye C, de Rijk P, de Jong BC, Affolabi D. The first phylogeographic population structure and analysis of transmission dynamics of M. africanum West African 1--combining molecular data from Benin, Nigeria and Sierra Leone. PLoS One. 2013 Oct 15;8(10):e77000. doi: 10.1371/journal.pone.0077000. eCollection 2013. PubMed 24143198 ↗
  • Affolabi D, Faihun F, Sanoussi N, Anyo G, Shamputa IC, Rigouts L, Kestens L, Anagonou S, Portaels F. Possible outbreak of streptomycin-resistant Mycobacterium tuberculosis Beijing in Benin. Emerg Infect Dis. 2009 Jul;15(7):1123-5. doi: 10.3201/eid1507.080697. PubMed 19624936 ↗
  • Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, van Embden J. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol. 1997 Apr;35(4):907-14. doi: 10.1128/jcm.35.4.907-914.1997. PubMed 9157152 ↗
  • Gagneux S, Small PM. Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect Dis. 2007 May;7(5):328-37. doi: 10.1016/S1473-3099(07)70108-1. PubMed 17448936 ↗
  • Castets M. [Mycobacterium africanum (author's transl)]. Med Trop (Mars). 1979 Mar-Apr;39(2):145-8. French. PubMed 91078 ↗
  • Parwati I, van Crevel R, van Soolingen D, van der Zanden A. Application of spoligotyping to noncultured Mycobacterium tuberculosis bacteria requires an optimized approach. J Clin Microbiol. 2003 Nov;41(11):5350-1. doi: 10.1128/JCM.41.11.5350-5351.2003. No abstract available. PubMed 14605204 ↗
  • Asante-Poku A, Yeboah-Manu D, Otchere ID, Aboagye SY, Stucki D, Hattendorf J, Borrell S, Feldmann J, Danso E, Gagneux S. Mycobacterium africanum is associated with patient ethnicity in Ghana. PLoS Negl Trop Dis. 2015 Jan 8;9(1):e3370. doi: 10.1371/journal.pntd.0003370. eCollection 2015 Jan. PubMed 25569290 ↗
  • Yin X, Zheng L, Lin L, Hu Y, Zheng F, Hu Y, Wang Q. Commercial MPT64-based tests for rapid identification of Mycobacterium tuberculosis complex: a meta-analysis. J Infect. 2013 Nov;67(5):369-77. doi: 10.1016/j.jinf.2013.06.009. Epub 2013 Jun 22. PubMed 23796870 ↗
  • Sanoussi CN, de Jong BC, Affolabi D, Meehan CJ, Odoun M, Rigouts L. Storage of Sputum in Cetylpyridinium Chloride, OMNIgene.SPUTUM, and Ethanol Is Compatible with Molecular Tuberculosis Diagnostic Testing. J Clin Microbiol. 2019 Jun 25;57(7):e00275-19. doi: 10.1128/JCM.00275-19. Print 2019 Jul. PubMed 31092592 ↗
  • Sanoussi CN, Affolabi D, Rigouts L, Anagonou S, de Jong B. Genotypic characterization directly applied to sputum improves the detection of Mycobacterium africanum West African 1, under-represented in positive cultures. PLoS Negl Trop Dis. 2017 Sep 1;11(9):e0005900. doi: 10.1371/journal.pntd.0005900. eCollection 2017 Sep. PubMed 28863143 ↗
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Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reachedSimilar studies: half by the dot; the band is the middle halfHalf of similar studies reached it by the dot; the band is the middle half, from a quarter to three quarters

Ran from Apr 2016 to primary completion in Jan 2018, 20 months.

Of 122 non-industry observational studies under Tuberculosis, half reached primary completion within 41 months of starting (the median), counting those still running; a quarter within 24 and three quarters within 76. This study's 20 months is below that.

Counting every sponsor, half of 134 studies reached it within 36 months; a quarter within 21 and three quarters within 76.

How these figures are worked out, and which studies are left out of them.

Registered
Apr 4, 2016
First posted
Apr 20, 2016
StartActual
Apr 12, 2016
Primary completionActual
Jan 8, 2018
CompletionActual
Dec 12, 2019
Last update
Feb 23, 2021
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Feb 23, 2021, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
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Registry details

Key details

Study ID
NCT02744469
Lead sponsor
Laboratoire de Référence des Mycobactéries
Collaborators
Direction Générale de la Coopération au Développement, Belgique, Institute of Tropical Medicine, Belgium, Universiteit Antwerpen, Laboratoire de Référence des Mycobactéries, Benin republic, Centre National Hospitalier Universitaire de Pneumo-Phtisiologie de Cotonou, Benin, Centres de Diagnostic et de Traitement de la tuberculose, National Tuberculosis Programme, Benin
Responsible party
Sponsor
First posted
Apr 20, 2016
Start date
Apr 12, 2016
Primary completion
Jan 8, 2018
Completion
Dec 12, 2019
Last update
Feb 23, 2021

Study contacts

Dissou Affolabi, MD PhD Prof
principal investigator · Laboratoire de Référence des Mycobactéries, Benin
Bouke de Jong, MD PhD Prof
principal investigator · Institute of Tropical Medicine, Belgium

Oversight

Data monitoring committee
No
View the source record on ClinicalTrials.gov ↗

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This study is completed, as verified in Feb 2021. You cannot join it, but the record below documents what was studied.

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