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CompletedNCT05311891South-SpikeUpdated Oct 16, 2026

Variants of SARS-CoV-2 Causing COVID-19 in Africa

An observational study in COVID-19, sponsored by ANRS, Emerging Infectious Diseases. Completed at 6 sites in 6 countries. Open to participants aged 18 Years and older, including healthy volunteers. Per ClinicalTrials.gov, last updated 2026-10-16.

Sponsored by ANRS, Emerging Infectious Diseases · Observational

Updated Oct 16, 2026Now CompletedPrimary completion moved+2 moreGo to Updates ↓
Study type
Observational
Model
Case-only
Time perspective
Prospective
Enrollment
12,600
Ages
18 Years and older
Sex
All
01

Study summary

The main objective of this research is to identify and characterize the different molecular variants of SARS-CoV-2, emerging and / or circulating in several countries of Sub-Saharan Africa (Burkina Faso, Côte d'Ivoire, Gabon, Mali, Chad and Republic of Congo) and determine their role in the evolution of the pandemic.

Read the detailed description

The main objective of this research is to identify and characterize the different molecular variants of SARS-CoV-2, emerging and / or circulating in several countries of Sub-Saharan Africa (Burkina Faso, Côte d'Ivoire, Gabon, Mali, Chad and Republic of Congo) and determine their role in the evolution of the pandemic.

The research will combine retrospective and prospective approaches to determine the evolutionary dynamics of the virus since the start of the pandemic. It is planned to sequence the entire Spike protein gene for 1550 viruses and make 300 entire genomes. This work will be supplemented by antibody seroneutralization and respiratory transcriptomics tests, in order to estimate the immuno-virological response of the COVID-19 disease associated with the identified SARS-CoV-2 variants.

02

Conditions studied

  • COVID-19

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03

In context

COVID-19

7,990 studies on the registry are indexed under COVID-19; 466 are open to participants now.

This study's enrollment of 12,600 is above the median of 268 across 3,208 observational studies indexed under COVID-19.

Browse COVID-19 studies →

Lead sponsor

ANRS, Emerging Infectious Diseases is the lead sponsor of 215 studies on the registry; 38 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years and older
Sexes eligible
All
Accepts healthy volunteers
Yes
Sampling method
Non-probability sample

Study population

Participant presenting for a SARS COV2 diagnosis, with or without symptoms

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Major subject (cf. country)
  • Presenting for a SARS-COV-2 diagnosis, whether symptomatic or not
  • Not objecting to participating in the research

Exclusion criteria

Exclusion Criteria:

  • NA
05

Study design

Observational model
Case-only
Time perspective
Prospective
Enrollment
12,600 participants (actual)
Patient registry
No
Biospecimen retention
Samples without dna

Groups and cohorts

  • Retrospective

    12000 participants positive for SARS-COV-2

    Diagnostic Test: RT PCR

  • Prospective

    600 participants positive for SARS-COV-2

    Diagnostic Test: RT PCR

Interventions

  • Diagnostic testRT PCR

    Characterize the different molecular variants of SARS-CoV-2, determine the escape potential of the new variants from neutralization by monoclonal antibodies and currently available vaccines and characterization of the mRNAs expressed in infected persons

    Also known as: Sequencing of the S gene, Sequencing of the entire SARS-COV-2 genome, Seroneutralization of antibodies, Respiratory transcriptomics

06

What researchers measure

Primary outcomes

  1. Number of SARS-CoV-2 sequences generated partially and in whole genome

    This outcome represent our main gaol and will include sequences that were partially generated in the Spike proteine and full genomes as well. Our current target is 1550 sequences.

    Time frame: Through study completion, an average of 1 year.

Secondary outcomes

  1. Number of individuals tested positive for COVID-19

    This outcome will be focused on the number of persons that will be tested positive for COVID-19 throughout the study, using SARS-CoV-2 rapid antigen tests. We planned to screen 12000 individuals overall in the six participating countries.

    Time frame: Up to six months

  2. Number of new SARS-CoV-2 variants identify

    This outcome represents the number of new viruses that are identified at the end of the study and have not been reported previously.

    Time frame: Through study completion, an average of 1 year.

07

Study locations

6 sites
  • Centre de Référence pour les pathogènes émergents et réémergent
    Bobo-Dioulasso, BP 2161, Burkina Faso
  • Centre Hospitalier Universitaire la Référence Nationale (CHU-RN)
    N'Djamena, BP : 130, Chad
  • CIRBA
    Abidjan, Côte d’Ivoire
  • Unité Mixte de Recherche CIRMF-SSM
    Libreville, 20404, Gabon
  • SEREFO
    Bamako, BP: 1805, Mali
  • Laboratoire National de Santé Publique Brazzaville
    Brazzaville, Republic of the Congo
08

Timeline

1 registry update since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reachedDate before it movedWhere the date was before it movedSimilar studies: half by the dot; the band is the middle halfHalf of similar studies reached it by the dot; the band is the middle half, from a quarter to three quarters

Ran from Sep 2022 to primary completion in Oct 2023, 13 months.

Of 1,640 non-industry observational studies under COVID-19, half reached primary completion within 14 months of starting (the median), counting those still running; a quarter within 5 and three quarters within 30. This study's 13 months is close to that.

Counting every sponsor, half of 1,774 studies reached it within 13 months; a quarter within 5 and three quarters within 29.

Since we started tracking on Sep 25, 2026, the dates moved once, on Oct 16, 2026: primary completion Oct 2022 → Oct 2023 and completion Oct 2022 → Dec 2023.

Earlier changes are on the record history on ClinicalTrials.gov ↗

How these figures are worked out, and which studies are left out of them.

Registered
Mar 23, 2022
First posted
Apr 5, 2022
StartActual
Sep 30, 2022
Primary completionActual
Oct 30, 2023was Oct 2022
CompletionActual
Dec 30, 2023was Oct 2022
Last update
Oct 16, 2026
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
Status
Status unknown→Completed
changed Oct 16, 2026
Primary completion
Oct 2022→Oct 30, 2023 (actual)
Oct 16, 2026
Study completion
Oct 2022→Dec 30, 2023 (actual)
Oct 16, 2026
Show all 1 update
  1. Oct 16, 2026
    Status unknown→Completed
    Primary completion Oct 2022→Oct 30, 2023 (now actual)
    Study completion Oct 2022→Dec 30, 2023 (now actual)
    + 6 other changes: identifiers, verification date, design details, contact details, site details and index terms

From the registry record's own update history. This site started tracking changes on Sep 25, 2026; for anything earlier, see the record history on ClinicalTrials.gov ↗

09

Registry details

Key details

Study ID
NCT05311891
Collaborators
Institut de Recherche pour le Developpement, Institut National de la Santé Et de la Recherche Médicale, France
Responsible party
Sponsor
First posted
Apr 5, 2022
Start date
Sep 30, 2022
Primary completion
Oct 30, 2023
Completion
Dec 30, 2023
Last update
Oct 16, 2026

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

Not currently enrolling

This study is completed, as verified in Oct 2026. You cannot join it, but the record below documents what was studied.

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