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RecruitingNCT04707872Updated Oct 6, 2026

Trifecta-Heart cfDNA-MMDx Study

An observational study in Heart Transplant Rejection, sponsored by University of Alberta. Recruiting at 12 sites in 7 countries. Per ClinicalTrials.gov, last updated 2026-10-06.

Sponsored by University of Alberta · Observational

From the registry’s dates

  • Started Jun 2021; still recruiting 5 years 4 months later.
Study type
Observational
Model
Cohort
Time perspective
Prospective
Enrollment
300
Sex
All
01

Study summary

Demonstrate the relationship between DD-cfDNA levels and HLA antibodies in blood transplant recipient and the Molecular Microscope® (MMDx) Diagnostic System results in indication and protocol biopsies from heart transplants.

Read the detailed description

The current standard for assessment of rejection in heart transplants is an endomyocardial biopsy (EMB) interpreted by histology according to ISHLT guidelines. This has considerable error rates, many due to the high disagreement among pathologists in assessing lesions and diagnoses. To address the unmet need for precision and accuracy, the Alberta Transplant Applied Genomics Centre (ATAGC, University of Alberta) has developed a new diagnostic system - the Molecular Microscope® Diagnostic System (MMDx), which uses microarrays to define the global gene expression features of rejection and injury. Now a new screening test is being introduced: the monitoring of donor-derived cell-free DNA (DD-cfDNA) released in the blood by the heart during rejection. The Natera Inc DD-cfDNA Prospera® test is based on the massively multiplex polymerase chain reaction that targets 13,392 single nucleotide polymorphisms and targeted sequences are quantified by Next Generation Sequencing. The Prospera® test has been done on kidney transplant recipients and detected "active rejection" and differentiated it from borderline rejection and no rejection. However, Prospera® test was not examined (the DD-cfDNA results) in heart transplant recipients. DD-cf-DNA test for heart transplants must now be calibrated against MMDx that is based on global gene expression, the new standard for biopsy interpretation. The present study will calibrate centrally measured (Natera Inc) DD-cfDNA levels obtained at the time of an indication or protocol biopsy against the MMDx measurements of T cell-mediated rejection (TCMR), antibody-mediated rejection (ABMR) and early and late tissue injury. The present study will compare DD-cfDNA and MMDx in 300 prospectively collected biopsies for clinical indications and protocol, and accompanying 600 blood samples, to calibrate the DD-cfDNA (Natera Inc.) levels against the MMDx biopsy diagnoses of TCMR, ABMR (and its stages), and acute (early) and chronic (late) injury, , as well as central assessment of HLA antibody (One Lambda) in 300 blood samples, interpreted centrally as donor specific antibody (DSA) based on the tissue typing results. Trifecta-Heart collected 718 biopsies, 709 cfDNA samples and 706 One Lambda samples so far. Due to a considerable interest from participation centers, this study aims to collect 300 more biopsies and corresponding blood samples. This study is an extension of the INTERHEART ClinicalTrials.gov Identifier: NCT02670408

02

Conditions studied

  • Heart Transplant Rejection

Keywords

  • Donor derived cfDNA
  • gene expression
  • heart transplant biopsy
03

In context

Lead sponsor

University of Alberta is the lead sponsor of 800 studies on the registry; 168 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
Child (0–17), Adult (18–64), Older adult (65+)
Sexes eligible
All
Accepts healthy volunteers
No
Sampling method
Probability sample

Study population

The study population includes patients with a functioning heart transplant undergoing a biopsy for clinical indications or surveillance (protocol) biopsy.

Inclusion criteria

  • All heart transplant recipients undergoing a biopsy for clinical indications and protocol biopsies, as determined by their physician or surgeon, will be eligible to enroll in the study.
  • Patients are enrolled based on standard of care biopsies, including surveillance biopsies in high-risk patients, with informed consent.

Exclusion criteria

Exclusion Criteria:

  • Patients will be excluded from the study if they decline participation
  • Are unable to give informed consent.
  • Recipients of multiple organs.
05

Study design

Observational model
Cohort
Time perspective
Prospective
Enrollment
300 participants (estimated)
Patient registry
No
Biospecimen retention
Samples without dna

Groups and cohorts

  • Heart transplant protocol and for cause biopsies

    The study population includes patients with a functioning heart transplant undergoing a biopsy for clinical indications as standard of care, or protocol biopsies of heart in high-risk patients, or follow-up after treatment.

    Diagnostic Test: MMDx diagnostic test · Diagnostic Test: Prospera · Diagnostic Test: HLA antibody

Interventions

  • Diagnostic testMMDx diagnostic test

    Microarray test of gene expression in heart biopsies

  • Diagnostic testProspera

    Donor derived cell-free DNA in patient blood

  • Diagnostic testHLA antibody

    Centralized measurement of HLA antibodies in patient blood

06

What researchers measure

Primary outcomes

  1. Calibration of Prospera test for T cell-mediated rejection

    Set DD-cfDNA test cut-off values against the probability of T cell-mediated rejection in the biopsy as reported by MMDx. Calibration of DD-cfDNA test cut-off values against the probability of T cell-mediated rejection in the biopsy as reported by MMDx.

    Time frame: 18 months

  2. Calibration of Prospera test for antibody-mediated rejection

    Set DD-cfDNA test cut-off values against the probability of antibody-mediated rejection in the biopsy as reported by MMDx.

    Time frame: 18 months

  3. Calibration of Prospera test for heart injury

    Set DD-cfDNA test cut-off values against the probability of acute and chronic heart injury in the biopsy as reported by MMDx.

    Time frame: 18 month

  4. Report calibrated Prospera test results for rejection

    Obtain clinicians feedback

    Time frame: 6 months

  5. Report calibrated Prospera test results for heart injury

    Obtain clinicians feedback

    Time frame: 6 month

Secondary outcomes

  1. Determine if Prospera blood test can replace heart biopsy test

    Obtain clinicians feedback

    Time frame: 6 month

  2. Determine if Prospera blood test can replace follow up heart biopsy

    Determine whether resolution of DD-cfDNA after treatment can monitor response to therapy and avoid follow-up biopsies

    Time frame: 6 month

  3. Assessment of donor-specific antibody status

    Report and compare the DSA status based on centralized and local HLA antibody measurement.

    Time frame: 6 months

07

Study locations

9 of 12 sites recruiting
  • Baptist Health Institute for Research and Innovation
    Little Rock, Arkansas 72205, United States
    Recruiting
  • Tampa General Hospital, 409 Bayshore Blvd.
    Tampa, Florida 33606, United States
    • Kristyn Kuzianik · Contact · kkuzianik@tgh.org
    • Benjamin Mackie, MD · Principal investigator
    Recruiting
  • Columbia University Medical Center, Columbia Interventional Cardiovascular Care
    West New York, New Jersey 10032, United States
    Recruiting
  • Montefiore Medical Center, 3319 Rochambeau Avenue, 2nd FL
    The Bronx, New York 10467, United States
    Recruiting
  • Annette C. and Harold C. Simmons Transplant Institute, BaylorScott&White Research Institute
    Dallas, Texas 75246, United States
    Recruiting
  • Cardiovascular Medicine, University of Utah Health
    Salt Lake City, Utah 84132, United States
    Recruiting
  • Cardiac Transplantation Laboratory, The Victor Chang Cardiac Research Institute
    Darlinghurst, NSW 2010, Australia
    Not yet recruiting
  • Division of Cardiology, University of Alberta
    Edmonton, Alberta T6G 2R7, Canada
    • Daniel Kim, MD · Contact · dk@ualberta.ca
    • Daniel Kim, MD · Principal investigator
    Recruiting
  • Institute for Clinical and Experimental Medicine - IKEM Videnska 1958/9
    Prague, 140 21, Czechia
    • Tereza Novakowa · Contact · novt@ikem.cz
    • Vojtech Melenovsky, MD PhD · Principal investigator
    Recruiting
  • Heart Failure and Heart Transplant Unit, University of Bologna
    Bologna, 40138, Italy
    Not yet recruiting
  • Silesian Center for Heart Diseases (Ś!ąskie Centrum Chorób Serca w Zabrzu
    Zabrze, 41-800, Poland
    Recruiting
  • Advanced Heart Failure Transplant Unit
    A Coruña, Spain
    Not yet recruiting
08

References and documents

Publications

  • Madill-Thomsen KS, Halloran PF. Precision diagnostics in transplanted organs using microarray-assessed gene expression: concepts and technical methods of the Molecular Microscope(R) Diagnostic System (MMDx). Clin Sci (Lond). 2024 Jun 5;138(11):663-685. doi: 10.1042/CS20220530. PubMed 38819301 ↗
  • Halloran PF, Madill-Thomsen KS. Donor-derived Cell-free DNA: A Step Forward in the Quest for Transplant Truth. Transplantation. 2025 Jun 1;109(6):910-914. doi: 10.1097/TP.0000000000005332. Epub 2025 Jan 28. No abstract available. PubMed 39883025 ↗
  • Halloran PF, Reeve J, Mackova M, Madill-Thomsen KS, Demko Z, Olymbios M, Campbell P, Melenovsky V, Gong T, Hall S, Stehlik J. Comparing Plasma Donor-derived Cell-free DNA to Gene Expression in Endomyocardial Biopsies in the Trifecta-Heart Study. Transplantation. 2024 Sep 1;108(9):1931-1942. doi: 10.1097/TP.0000000000004986. Epub 2024 Aug 20. PubMed 38538559 ↗
  • Madill-Thomsen KS, Hidalgo LG, Mackova M, Campbell P, Demko Z, Felius J, Gong T, Hall S, Kim DH, Kuczaj A, Lowe D, Maliakkal N, Melenovsky V, Olympios M, Patel S, Prewett A, Przybylowski P, Sayer G, Stehlik J, Tseliou E, Uriel N, Halloran PF. Defining the relationships among four tests for assessing antibody-mediated rejection in heart transplants in a prospective, observational study. J Heart Lung Transplant. 2026 Apr;45(4):659-670. doi: 10.1016/j.healun.2025.10.024. Epub 2025 Nov 13. PubMed 41241034 ↗
  • Madill-Thomsen KS, Hidalgo LG, Mackova M, Demko Z, Prewett A, Campbell P, Felius J, Gong T, Hall S, Kim DH, Kuczaj A, Lowe D, Maliakkal N, Melenovsky V, Olympios M, Patel S, Przybylowski P, Sayer G, Tseliou E, Uriel N, Stehlik J, Halloran PF; Trifecta-Heart Study Group. Comparing DSA-negative and DSA-positive antibody-mediated rejection in heart transplants: Results from the Trifecta-Heart study. J Heart Lung Transplant. 2026 Jul;45(7):1046-1057. doi: 10.1016/j.healun.2026.03.004. Epub 2026 Mar 13. PubMed 41833593 ↗
  • Halloran PF, Madill-Thomsen KS, Biagini DG, Kaur N, Prewett A, Suresh N, Demko ZP, Bhorade S, Olympios M, Gauthier PT, Campbell PT, Gong T, Hall S, Kim DH, Kuczaj A, Przybylowski P, Melenovsky V, Patel SR, Sayer G, Stehlik J, Tseliou E, Uriel N, Mackova M; Trifecta-Heart Investigators. A two-threshold donor-derived cell-free DNA algorithm improves detection of molecular rejection in heart transplantation. J Heart Lung Transplant. 2026 Jun 22:S1053-2498(26)01953-4. doi: 10.1016/j.healun.2026.06.009. Online ahead of print. PubMed 42331120 ↗
  • Halloran PF, Madill-Thomsen KS. The Molecular Microscope Diagnostic System: Assessment of Rejection and Injury in Heart Transplant Biopsies. Transplantation. 2023 Jan 1;107(1):27-44. doi: 10.1097/TP.0000000000004323. Epub 2022 Dec 8. PubMed 36508644 ↗

Individual participant data

Plan to share: No — Only IPD data will be shared within a participating center.

09

Updates

1 registry update since Sep 25, 2026
Minor edits
Nothing that changes what the study is or who can join. Edited: verification date, description and references
1 update, last Oct 6, 2026
Show all 1 update
  1. Oct 6, 2026
    Minor edits only
    + 3 other changes: verification date, description and references

From the registry record's own update history. This site started tracking changes on Sep 25, 2026; for anything earlier, see the record history on ClinicalTrials.gov ↗

10

Registry details

Key details

Study ID
NCT04707872
Lead sponsor
University of Alberta
Collaborators
Natera, Inc., One Lambda
Responsible party
Sponsor
First posted
Jan 13, 2021
Start date
Jun 1, 2021
Primary completion
Dec 2027 (estimated)
Completion
Jul 2028 (estimated)
Last update
Oct 6, 2026

Study contacts

Konrad Famulski, PhD
Contact
konrad@ualberta.ca
1 780 782 9463
Robert Polakowski, PhD
Contact
polakows@ualberta.ca
1 780 492 5091
Philip F Halloran, MD PhD
principal investigator · Alberta Transplant Applied Genomics Center, University of Alberta

Oversight

Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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