ClinicalTrials.gg
WithdrawnNCT04230746Updated Nov 3, 2021

Effect of Antibiotics on Urinary Microbiome

An Early Phase 1 interventional study of Bactrim DS 800Mg-160Mg Tablet and Placebo oral tablet in Microtia, UTI and Bacteriuria, sponsored by Johns Hopkins University. Withdrawn. Open to participants aged 18 Years and older, including healthy volunteers. Per ClinicalTrials.gov, last updated 2021-11-03.

Sponsored by Johns Hopkins University · Early Phase 1, Interventional, and Basic science

Why this study was withdrawn
funding , recruitment issues
Phase
Early Phase 1
Study type
Interventional
Enrollment
0
Allocation
Randomized
Ages
18 Years and older
Sex
All
01

Study summary

Planning to study urine microbiota at baseline and after administration of bactrim antibiotics in healthy volunteers. Will intermittently collect voided urine specimens for 16 s DNA analysis over a period of 6 months after 2 weeks of bactrim or placebo.

Read the detailed description

Urinary tract infections (UTI) are the most common type of human bacterial disease, prompting more than 10 million physician office visits annually at a healthcare cost of over $1 billion dollars. Treatment of UTI is typically empiric or culture-driven antibiotics which are associated with ever increasing bacterial resistance. Over the last decade, The Human Microbiome Project has established that even 'culture-negative' urine represents a diverse ecosystem of bacteria. Despite broad use of antibiotics to cure disease for the past 90 years, the broader impact of antibiotics on typical flora are not well understood. Antibiotics are also commonly used as prophylaxis for surgical procedures in the urinary tract altering patient outcomes in unforeseen ways. Despite widespread utilization of antibiotics, the longitudinal impact on the dynamic intravesical environment remains completely unknown.

Dysbiosis in the microbiome has been suggested as a causative agent in a wide range of disease: arthritis, metabolic disorders, neurologic disease, inflammatory bowel conditions, and cancer. Yet there remains a fundamental knowledge gap regarding the short and long-term effect of antibiotics on microbiota communities. Specifically within the urinary tract, variance in baseline commensal organisms have been associated with interstitial cystitis, overactive bladder, frequent symptomatic urinary tract infection and potentially cancer development. The study of microbiota reveal pathways and mechanisms that play important roles in immunological response and health but studies typically are limited to the gut.

To address this knowledge gap, the investigators plan a placebo controlled randomized trial to test the longitudinal impact of 10 days of trimethoprim-sulfamethoxazole on the urinary microbiome in healthy adults. Data collection for individual participants will persist for a period of 6 months. The investigators hypothesize antibiotic administration contributes to a rise in bacterial resistance and directly leads to urine microbiome dysbiosis. The investigators further hypothesize the urinary microbiome does not return to baseline, with loss of certain bacteria permanent during the study period. While the investigators' study is groundbreaking and novel, the feasibility of the investigators' experimental plan has been previously demonstrated in the study of the salivary and gut microbiome. Ultimately the investigators anticipate even a single course of antibiotic treatment may increase the risk of bacterial resistance and lead to long-lasting shifts in the urinary microbiome. If confirmed, this knowledge will directly influence clinical decision making in antibiotic selection, duration, and utility.

02

Conditions studied

  • Microtia
  • UTI
  • Bacteriuria
  • Antibiotic Resistant Infection
  • Antibiotics Causing Adverse Effects in Therapeutic Use

Keywords

  • microbiome
  • antibiotics
  • resistance
  • flora
03

In context

Congenital Microtia

33 studies on the registry are indexed under Congenital Microtia; 10 are open to participants now.

Browse Congenital Microtia studies →

Lead sponsor

Johns Hopkins University is the lead sponsor of 1,815 studies on the registry; 315 are open to participants now.

Of its 208 completed or terminated interventional studies of FDA-regulated products, 144 (69%) have results posted.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years and older
Sexes eligible
All
Accepts healthy volunteers
Yes

Eligibility criteria

Exclusion Criteria:

  • Diagnosed or suspected urinary tract infection in prior 6 months
  • Treated with antibiotics for any reason in prior 6 months
  • Allergy to sulfa
  • Under 18
  • Pregnant or planning to become pregnant in the next 12 months by self report (as is the clinical standard for prescribing this medication for suspected or proven UTI treatment)
  • Use indwelling or intermittent urinary hardware or implant such as supra-pubic tube or catheter
  • Neurogenic bladder
  • Baseline renal insufficiency
  • Glucose-6-phosphate dehydrogenase deficiency
  • Taking angiotensin converting enzyme
  • Angiotensin receptor blocker
  • Nursing
  • /AIDS
  • On drugs
  • On Chemotherapy/Immunotherapy
  • Liver dysfunction
  • On the following medications: DOFETILIDE, METHENAMINE \& LEVOMETHADYL; WARFARIN \& Methotrexate; GEMIFLOXACIN, DIGOXIN, PYRIMETHAMINE, CLASS IA ANTIARRHYTHMIC AGENTS (Quinidine, procainamide, disopyramide), TRICYCLIC ANTIDEPRESSANTS (amitriptyline, desipramine, doxepin, Imipramine, nortriptyline, amoxapine, clomipramine, maprotiline, trimipramine, and protriptyline), LEUCOVORIN CALCIUM.
Terms in these criteria, in plain language(2)

Underlined terms in the criteria open these too. Explained by clinicaltrials.gg, not part of the registry record. The study team decides who can take part.

HIV

The human immunodeficiency virus, which weakens the immune system.

Many studies now accept people whose HIV is controlled on treatment, judged by the viral load and the CD4 count. Check the limits this study sets.

Immunosuppression

A weakened immune system. It can come from an illness, such as HIV or some blood cancers, or from medicines that turn the immune system down, for example after an organ transplant or for an autoimmune disease; steroids at higher doses count.

Read whether the line is about a condition or about medicines, and which medicines and doses it means.

05

Study design

Phase
Early Phase 1
Primary purpose
Basic science
Allocation
Randomized
Intervention model
Parallel assignment
Masking
Triple (Participant, Care provider, Investigator)
Enrollment
0 participants (actual)

Study arms

  • Placebo comparator
    Placebo

    Participants will be recruited and enrolled. Participants will be surveyed regarding environmental, health, and behavioral practices. (Instrument 1) . Then a clean catch urine specimen will be collected. Participants will be provided with placebo to be taken twice daily. This will be considered day 0. Participants will then be instructed to take the study drug twice daily and return on Day 2, Day 5, Day 10, Day 30, and Day 180 for additional clean-catch urine specimen.

    Drug: Placebo oral tablet

  • Experimental
    Bactrim

    Participants will be recruited and enrolled. Participants will be surveyed regarding environmental, health, and behavioral practices. (Instrument 1) . Then a clean catch urine specimen will be collected. Participants will be provided with Bactrim 800/120 to take twice daily. This will be considered day 0. Participants will then be instructed to take the study drug twice daily and return on Day 2, Day 5, Day 10, Day 30, and Day 180 for additional clean-catch urine specimen.

    Drug: Bactrim DS 800Mg-160Mg Tablet

Interventions

  • DrugBactrim DS 800Mg-160Mg Tablet

    To study effect on urinary microbiome

    Also known as: bactrim, trimethoprim sulfamethoxazole, Septra, sulfatrim

  • DrugPlacebo oral tablet

    To study effect on urinary microbiome

06

What researchers measure

Primary outcomes

  1. Change in Microbiome flora number of organisms

    Analysis of 16S rRNA gene amplicon data to determine number of varied organisms (genus and species).

    Time frame: At Baseline, Day 2, Day 5, Day 10, Day 30, and Day 180 of study

  2. Change in Microbiome flora percentage distribution of organisms

    Analysis of 16S rRNA gene amplicon data to determine the percent distribution of organisms (microbiologic genus and species).

    Time frame: At Baseline, Day 2, Day 5, Day 10, Day 30, and Day 180 of study

07

Study locations

No study locations are listed for this record.

08

References and documents

Individual participant data

Plan to share: No

No publications or documents are linked to this record.

09

Timeline

Tracking since Sep 25, 2026
ElapsedEstimatedEstimated, not yet reached

Start is estimated for Oct 2023; primary completion for Feb 2025, 16 months later.

How these figures are worked out, and which studies are left out of them.

Registered
Dec 27, 2019
First posted
Jan 18, 2020
StartEst.
Oct 2023
Primary completionEst.
Feb 2025
CompletionEst.
Feb 2026
Last update
Nov 3, 2021
What these dates mean
Start.
When the first participant enrolled; while estimated, when the study expects to open to recruitment.
Primary completion.
When the last participant was examined or treated to collect data for the study's main question, its primary outcome. A study that stopped early gives the date its data collection stopped.
Completion.
When the last participant's last visit took place, for every outcome, secondary ones and side effects included: the end of the study. Often later than primary completion, sometimes the same day.
Actual and Est.
Actual means the registry says the date has happened. Est. (estimated) is a date the sponsor plans or expects. It can still move, and the sponsor is expected to change it to actual once it has passed.
No changes since tracking began. The registry record was last updated on Nov 3, 2021, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
10

Registry details

Key details

Study ID
NCT04230746
Responsible party
Sponsor
First posted
Jan 18, 2020
Start date
Oct 2023 (estimated)
Primary completion
Feb 2025 (estimated)
Completion
Feb 2026 (estimated)
Last update
Nov 3, 2021

Study contacts

Andrew J Cohen, MD
principal investigator · Johns Hopkins University

Oversight

Data monitoring committee
No
FDA-regulated drug
Yes
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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