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CompletedNCT02401815Updated Feb 14, 2025Results posted

CGT9486 (Formerly Known as PLX9486) as a Single Agent and in Combination With PLX3397 (Pexidartinib) or Sunitinib in Participants With Advanced Solid Tumors

A Phase 1/2 interventional study of CGT9486 and Pexidartinib in Gastrointestinal Stromal Tumors, sponsored by Cogent Biosciences, Inc.. Completed at 6 sites in United States. Open to participants aged 18 Years and older. Per ClinicalTrials.gov, last updated 2025-02-14.

Sponsored by Cogent Biosciences, Inc. · Phase 1/2, Interventional, and Treatment

Phase
Phase 1/2
Study type
Interventional
Enrollment
51
Allocation
Non-randomized
Ages
18 Years and older
Sex
All
01

Study summary

The goal of this clinical research study is to learn how CGT9486 (fka PLX9486) may affect cancer cells with certain mutations in the KIT gene, specifically in participants with types of advanced solid tumors including gastrointestinal stromal tumor (GIST).

CGT9486 (fka PLX9486) is designed to block KIT gene mutations. These mutations can cause cancer and cancer cell growth. By blocking these mutations, the drug may kill the cancer cells with the mutation and/or stop the tumor from growing. By combining CGT9486 (fka PLX9486) with PLX3397 and CGT9486 (fka PLX9486) with sunitinib, the investigators hope to block most KIT gene mutations that drive cancer growth.

Read the detailed description

This study includes a dose escalation portion (Part 1) in which the safety profile and recommended phase 2 dose (RP2D) of CGT9486 as a single oral agent will be evaluated in participants with solid tumors (including GIST), followed by signal-seeking extension cohorts (Part 2). Enrollment in the combination treatment portions of the study (dose-finding for the CGT9486 + pexidartinib combination [Part 2b] and the CGT9486 + sunitinib combination [Part 2e]) is planned to be accrued using standard 3+3 study designs.

Parts 2a, 2c, 2d, and 2f are not conducted due to business decisions.

02

Conditions studied

  • Gastrointestinal Stromal Tumors

Keywords

  • Gastrointestinal Stromal Tumors
  • KIT
  • Biomarkers
  • PLX9486
  • PLX3397
  • Sunitinib
  • CGT9486
  • GIST
03

In context

Gastrointestinal Stromal Tumors

345 studies on the registry are indexed under Gastrointestinal Stromal Tumors; 60 are open to participants now.

This study's enrollment of 51 is close to the median of 50 across 253 interventional studies indexed under Gastrointestinal Stromal Tumors.

Browse Gastrointestinal Stromal Tumors studies →

Lead sponsor

Cogent Biosciences, Inc. is the lead sponsor of 14 studies on the registry; 6 are open to participants now.

Counted across the registry records on this site, refreshed daily.

04

Who can participate

Ages eligible
18 Years and older
Sexes eligible
All
Accepts healthy volunteers
No

Go through the criteria one by one — yes, no or not sure — and take the list to your doctor or the study team. Kept in this browser only.

Inclusion criteria

  • Male or female ≥18 years old.
  • Part 1, Part 2b, Part 2d, and Part 2e: Participants with advanced solid tumors who have tumor progression following standard therapy, have treatment-refractory disease, or for whom there is no effective standard of therapy.
  • Part 2d: Participants with non GIST solid tumors with KIT mutations, who are TKI naïve or have been previously treated with KIT directed TKI therapy who are appropriate for KIT directed TKI therapy
  • Part 2a, Part 2c, and Part 2f (GIST participants): Histologically confirmed locally advanced, metastatic and/or unresectable GIST.
  • Women of child-bearing potential (WOCBP) must have a negative serum pregnancy test at Screening (≤7 days prior to the first dose of study drug) and must agree to use an effective form of contraception from the time of the negative pregnancy test up to 6 months after the last dose of study drug.
  • Fertile men must agree to use an effective method of birth control during the study and for up to 6 months after the last dose of study drug.
  • All associated toxicity from previous or concurrent cancer therapy must be resolved (to ≤ Grade 1 or Baseline) prior to study treatment administration.
  • Willing and able to provide written informed consent prior to any study related procedures and to comply with all study requirements.
  • Eastern Cooperative Oncology Group (ECOG) Performance Status 0-2
  • Life expectancy ≥3 months.
  • Adequate hematologic, hepatic, and renal function:
  • Left ventricular ejection fraction (LVEF) >50% per echocardiogram (ECHO) or multiple-gated acquisition (MUGA) for participants on the sunitinib arms (Parts 2e and f).

Exclusion criteria

Exclusion Criteria:

  • Known or demonstrated wild type KIT or platelet-derived growth factor receptors (PDGF-R), or known or demonstrated mutations of PDGF R, sorbitol dehydrogenase (SDH), or neurofibromin 1 (NF 1) that are causative for the observed malignancy.
  • For Part 1 (phase 1, single agent): Participants with a known or presumed pathogenic KIT exon 13 or 14 resistance mutation.
  • Parts 2a and 2d: Participants with known or presumed pathogenic KIT exon 13 or 14 resistance mutations. (However, such participants are permitted on the combination arms of Parts 2b, 2c, 2e, or 2f.)
  • Presence of symptomatic or uncontrolled brain or central nervous system metastases. Participants with stable, treated brain metastases are eligible for this trial. However, participants must not have required steroid treatment for their brain metastases within 30 days of Screening.
  • Known or suspected allergy to the investigational agent or any agent given in association with this trial.
  • Clinically significant cardiac disease
  • Inability to take oral medication or significant nausea and vomiting, malabsorption, external biliary shunt, or significant bowel resection that would preclude adequate absorption.
  • Ongoing infection of ≥ Grade 2 severity.
  • Non-healing wound, ulcer, or bone fracture.
  • Known human immunodeficiency virus (HIV)-positive individuals on combination antiretroviral therapy, participants with known active hepatitis B or C, or chronic hepatitis B or C requiring treatment with antiviral therapy
  • Hepatobiliary diseases including biliary tract diseases, autoimmune hepatitis, inflammation, fibrosis, or cirrhosis of liver caused by viral, alcohol, or genetic reasons. Gilbert's disease is allowed if total bilirubin is ≤1.5 * upper limit of normal (ULN).
  • Interstitial lung disease with ongoing signs and symptoms at the time of informed consent.
  • Females who are pregnant or nursing.
  • Any psychological, familial, sociological, or geographical condition that could hamper compliance with the study protocol.
  • Strong CYP3A4 inhibitors or inducers within 14 days or 5 drug half-lives of the agent, whichever is longer, of study drug initiation or the need to continue these drugs during this study.
  • Major surgery or significant traumatic injury within 14 days of Cycle 1 Day 1.
  • History (within 2 years prior to first study drug administration) of another malignancy unless the malignancy was treated with curative intent and likelihood of relapse is small (\<5% in 2 years in the judgment of the investigator).
  • Anti-cancer therapy within the period immediately before Cycle 1 Day 1
05

Study design

Phase
Phase 1 / Phase 2
Primary purpose
Treatment
Allocation
Non-randomized
Intervention model
Sequential assignment
Masking
None (open label)
Enrollment
51 participants (actual)

Study arms

  • Experimental
    Part 1: CGT9486 250 mg QD

    Participants will receive CGT9486 250 milligrams (mg) orally once daily (QD) in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486

  • Experimental
    Part 1: CGT9486 350 mg QD

    Participants will receive CGT9486 350 mg orally QD in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486

  • Experimental
    Part 1: CGT9486 500 mg QD

    Participants will receive CGT9486 500 mg orally QD in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486

  • Experimental
    Part 1: CGT9486 1000 mg QD

    Participants will receive CGT9486 1000 mg orally QD in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486

  • Experimental
    Part 1: CGT9486 500 mg BID

    Participants will receive CGT9486 500 mg orally twice daily (BID) in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486

  • Experimental
    Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)

    Participants in fasting condition will receive CGT9486 500 mg orally QD in combination with pexidartinib 600 mg (administered as 1 capsule of 200 mg in the morning and 2 capsules of 200 mg in the evening) orally in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486 · Drug: Pexidartinib

  • Experimental
    Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)

    Participants in non-fasting condition will receive CGT9486 500 mg orally QD in combination with pexidartinib 600 mg (administered as 1 capsule of 200 mg in the morning and 2 capsules of 200 mg in the evening) orally in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486 · Drug: Pexidartinib

  • Experimental
    Part 2e: CGT9486 500 mg QD + Sunitinib 25 mg

    Participants will receive CGT9486 500 mg orally QD in combination with sunitinib 25 mg orally in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486 · Drug: Sunitinib

  • Experimental
    Part 2e: CGT9486 1000 mg QD + Sunitinib 25 mg

    Participants will receive CGT9486 1000 mg orally QD in combination with sunitinib 25 mg orally in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486 · Drug: Sunitinib

  • Experimental
    Part 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg

    Participants will receive CGT9486 1000 mg orally QD in combination with sunitinib 37.5 mg orally in 28-day dosing cycles. Treatment will continue until participant discontinuation, withdrawal, or study termination.

    Drug: CGT9486 · Drug: Sunitinib

Interventions

  • CGT9486 will be administered per dose and schedule specified in the arm.

  • Pexidartinib capsules will be administered per dose and schedule specified in the arm.

    Also known as: PLX3397

  • Sunitinib will be administered per dose and schedule specified in the arm.

06

What researchers measure

Primary outcomes

  1. Part 1: Recommended Phase 2 Dose (RP2D) of CGT9486

    RP2D was determined by incidence of dose limiting toxicity (DLT) using Common Terminology Criteria for Adverse Events (CTCAE) V4.03. DLTs: AEs that occurred during Cycle 1, possibly/probably related to study drug, and met 1 of the following criteria: Hematologic Toxicities: Grade 4 neutropenia for \>7 days, Grade ≥3 neutropenia with fever, Grade 4 thrombocytopenia, Grade ≥3 thrombocytopenia for \>7 days, Grade 4 anemia; Other Toxicities: Any Grade ≥3 (AE or laboratory) toxicity despite adequate supportive care except for following: Grade ≥3 nausea, vomiting, or diarrhea that resolved to Grade ≤2 within 72 hours; Grade 3 fatigue that resolved to Grade ≤2 within 14 days; Grade ≥3 asymptomatic changes in alkaline phosphatase, hypomagnesemia, hyperglycemia, or hypophosphatemia; Grade 3 increases in transaminases for ≤5 days; Any other Grade ≥3 toxicity for which further dose escalation deemed inappropriate.

    Time frame: Cycle 1 of Part 1 (Cycle length = 28 days)

  2. Part 1: Number of Participants With Treatment Emergent Adverse Events (TEAEs)

    An adverse event (AE) was any untoward medical occurrence in a participant administered study drug, which did not necessarily have a causal relationship with the treatment. An AE could be any unfavorable and unintended sign (for example, including an abnormal laboratory finding), symptom, or disease temporally associated with the use of the study drug, whether or not it was considered to be study drug related. This included any newly occurring event or previous condition that had increased in severity or frequency since the administration of study drug. A treatment-emergent AE (TEAE) was an AE that started or worsened in severity on or after the date of the initial dose of study drug. A summary of serious and all other non-serious adverse events regardless of causality is located in the Reported Adverse Events module.

    Time frame: From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 670 days)

  3. Part 1: Area Under The Concentration Time Curve From Time Zero to 24 Hours After Dosing (AUC0-24) of CGT9486

    AUC0-24 was determined by the linear trapezoidal rule for the ascending portion and by the log trapezoidal rule for the descending portion of the plasma profile. For BID dosing, Cycle 1 Day 15 AUC0-24 was calculated as 2 x area under the concentration time curve from time zero to 12 hours after dosing (AUC0-12). Missing concentration data were excluded from Pharmacokinetic (PK) analysis.

    Time frame: Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15

  4. Part 1: Maximum Observed Plasma Concentration (Cmax) of CGT9486

    Cmax was taken directly from bioanalytical data.

    Time frame: Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15

  5. Part 1: Time to Reach Cmax (Tmax) of CGT9486

    Tmax was taken directly from merged clinical and bioanalytical data, with time presented as nominal time relative to dose.

    Time frame: Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 (Day -10 for 350 mg QD cohort) and Cycle 1 Day 15

  6. Part 1: Half Life (T1/2) of PLX9486

    Participants in a selected Part 1 cohort (350 mg QD) participated in a PK substudy to obtain more complete information on the PK profile of PLX9486. Participants received a single dose of 350 mg of PLX9486 10 days prior to the start of repeated QD dosing and plasma concentrations were followed 0.5, 1, 2, 4, 6, and 9 hours postdose, and then once daily for 9 additional days prior to Cycle 1 Day 1.

    Time frame: Predose, 0.5, 1, 2, 4, 9, 24, 49, 72, 96, 120, 144, 168, 192, 216 hours postdose on Day -10

  7. Part 2e: RP2D of CGT9486 in Combination With Sunitinib

    RP2D was determined by incidence of DLT using CTCAE version 4.03 for severity grade. DLTs were defined as AEs that occurred during Cycle 1, classified as possibly/probably related to study drug, and met 1 of the following criteria: Hematologic Toxicities: Grade 4 neutropenia for \>7 days, Grade ≥3 neutropenia with fever, Grade 4 thrombocytopenia, Grade ≥3 thrombocytopenia for \>7 days or with bleeding, Grade 4 anemia; Other Toxicities: Any Grade ≥3 (AE or laboratory) toxicity despite adequate supportive care except for the following: Grade ≥3 nausea, vomiting, or diarrhea that resolved to Grade ≤2 within 72 hours; Grade 3 fatigue that resolved to Grade ≤2 within 14 days; Grade ≥3 asymptomatic changes in alkaline phosphatase, hypomagnesemia, hyperglycemia, or hypophosphatemia; Grade 3 increases in transaminases for ≤5 days; Any other Grade ≥3 toxicity for which further dose escalation deemed inappropriate.

    Time frame: Cycle 1 of Part 2e (Cycle length = 28 days)

  8. Part 2b: RP2D of PLX9486 in Combination With Pexidartinib

    RP2D was determined by incidence of DLT using CTCAE version 4.03 for severity grade. DLTs were defined as AEs that occurred during Cycle 1, classified as possibly/probably related to study drug, and met 1 of the following criteria: Hematologic Toxicities: Grade 4 neutropenia for \>7 days, Grade ≥3 neutropenia with fever, Grade 4 thrombocytopenia, Grade ≥3 thrombocytopenia for \>7 days or with bleeding, Grade 4 anemia; Other Toxicities: Any Grade ≥3 (AE or laboratory) toxicity despite adequate supportive care except for the following: Grade ≥3 nausea, vomiting, or diarrhea that resolved to Grade ≤2 within 72 hours; Grade 3 fatigue that resolved to Grade ≤2 within 14 days; Grade ≥3 asymptomatic changes in alkaline phosphatase, hypomagnesemia, hyperglycemia, or hypophosphatemia; Grade 3 increases in transaminases for ≤5 days; Any other Grade ≥3 toxicity for which further dose escalation deemed inappropriate.

    Time frame: Cycle 1 of Part 2 b (Cycle length = 28 days)

  9. Part 2b: Number of Participants With Any TEAEs and Treatment-Related TEAEs

    An AE was any untoward medical occurrence in a participant administered study drug, which did not necessarily have a causal relationship with the treatment. An AE could be any unfavorable and unintended sign (for example, including an abnormal laboratory finding), symptom, or disease temporally associated with the use of the study drug, whether or not it was considered to be study drug related. This included any newly occurring event or previous condition that had increased in severity or frequency since the administration of study drug. A TEAE was an AE that started or worsened in severity on or after the date of the initial dose of study drug. Treatment-related TEAEs included all events reported as "possibly related" or "probably related" to any of study treatment. A summary of serious and all other non-serious adverse events regardless of causality is located in the Reported Adverse Events module.

    Time frame: From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 868 days)

  10. Part 2e: Number of Participants With Any TEAEs and Treatment-Related TEAEs

    An AE was any untoward medical occurrence in a participant administered study drug, which did not necessarily have a causal relationship with the treatment. An AE could be any unfavorable and unintended sign (for example, including an abnormal laboratory finding), symptom, or disease temporally associated with the use of the study drug, whether or not it was considered to be study drug related. This included any newly occurring event or previous condition that had increased in severity or frequency since the administration of study drug. A TEAE was an AE that started or worsened in severity on or after the date of the initial dose of study drug. Treatment-related TEAEs included all events reported as "possibly related" or "probably related" to any of study treatment. A summary of serious and all other non-serious adverse events regardless of causality is located in the Reported Adverse Events module.

    Time frame: From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 825 days)

Secondary outcomes

  1. Part 1: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.1

    ORR was defined as the percentage of participants who achieved a best overall response of confirmed complete response (CR) or partial response (PR). CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (whether target or non-target) must had reduction in short axis to \<10 millimeters (mm). PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters.

    Time frame: From the date of first dose of study drug until the first appearance of CR or PR (maximum exposure: 670 days)

  2. Part 1: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1

    PFS was defined as the number of days from the first day of treatment (Cycle 1 Day 1) to the date of the first documented disease progression or date of death, whichever occurred first. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study (this included the baseline sum if that was the smallest on study). The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

    Time frame: From the first date of treatment until the first documented disease progression or date of death (maximum exposure: 670 days)

  3. Part 1: Duration of Response (DOR), as Assessed Using RECIST V1.1

    DOR was defined as the number of days from the date of first response (PR or CR confirmed at least 28 days later) to the date of first documented disease progression/relapse or death, whichever occurred first. CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (target or non-target) must had reduction in short axis to \<10 mm. PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study. The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

    Time frame: From the date of first response (PR or CR) to the date of first documented disease progression/relapse or death, whichever occurred first (maximum exposure: 670 days)

  4. Part 2: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.1

    ORR was defined as the percentage of participants who achieved a best overall response of confirmed CR or PR. CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (whether target or non-target) must had reduction in short axis to \<10 mm. PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters.

    Time frame: From the date of first dose of study drug until the first appearance of CR or PR (maximum exposure: 868 days)

  5. Part 2: Clinical Benefit Rate (CBR): Percentage of Participants With Clinical Benefit, as Assessed Using RECIST V1.1

    Participants were considered to experience clinical benefit if they had a best overall response of stable disease (SD) that lasted for at least 16 weeks, or confirmed best overall response of PR or CR. SD: Neither sufficient shrinkage to qualify for PR nor sufficient increase to qualify for progressive disease (PD), taking as reference the smallest sum diameters. CR: Disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (target or non-target) must had reduction in short axis to \<10 mm. PR: At least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters. PD: At least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study. The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression.

    Time frame: From the date of first dose of study drug until the first appearance of CR, PR, or SD (maximum exposure: 868 days)

  6. Part 2: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1

    PFS was defined as the number of days from the first day of treatment (Cycle 1 Day 1) to the date of the first documented disease progression or date of death, whichever occurred first. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study (this included the baseline sum if that was the smallest on study). The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

    Time frame: From the first date of treatment until the first documented disease progression or date of death (maximum exposure: 868 days)

  7. Part 2: Overall Survival

    Overall Survival was defined as the number of days from the first day of treatment (Cycle 1 Day 1) until the date of death. If a participant was lost to follow-up, overall survival was censored at the date of last contact. Median was calculated using Kaplan-Meier estimate.

    Time frame: From the first day of treatment until the date of death (maximum exposure: 868 days)

  8. Part 2: Overall Survival at Month 12

    Percentage of participants who survived at Month 12 have been reported.

    Time frame: Month 12

  9. Part 2: PFS at Month 6

    PFS was defined as the number of days from the first day of treatment (Cycle 1 Day 1) to the date of the first documented disease progression or date of death, whichever occurred first. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study (this included the baseline sum if that was the smallest on study). The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Percentage of participants with PFS at Month 6 are reported.

    Time frame: Month 6

  10. Part 2: Duration of Response (DOR), as Assessed Using RECIST V1.1

    DOR was defined as the number of days from the date of first response (PR or CR confirmed at least 28 days later) to the date of first documented disease progression/relapse or death, whichever occurred first. CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (target or non-target) must had reduction in short axis to \<10 mm. PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study. The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

    Time frame: From the date of first response (PR or CR) to the date of first documented disease progression/relapse or death, whichever occurred first (maximum exposure: 868 days)

  11. Part 2: AUC0-24 of CGT9486 in Combination With Pexidartinib or Sunitinib

    AUC0-24 was determined by the linear trapezoidal rule for the ascending portion and by the log trapezoidal rule for the descending portion of the plasma profile. Missing concentration data were excluded from PK analysis.

    Time frame: Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15

  12. Part 2: Cmax of CGT9486 in Combination With Pexidartinib or Sunitinib

    Cmax was taken directly from bioanalytical data.

    Time frame: Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15

  13. Part 2: Tmax of CGT9486 in Combination With Pexidartinib or Sunitinib

    Tmax was taken directly from merged clinical and bioanalytical data, with time presented as nominal time relative to dose.

    Time frame: Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15

07

Results

Posted Feb 14, 2025

Participant flow

This study included a dose escalation portion (Part 1) in which the safety profile and recommended phase 2 dose (RP2D) of CGT9486 as a single oral agent was evaluated in participants with solid tumors (including gastrointestinal stromal tumor \[GIST\]), followed by signal-seeking extension cohorts of CGT9486 in combination with pexidartinib or sunitinib (Part 2). Parts 2a, 2c, 2d, and 2f were not conducted due to business decisions.

Dose Escalation (up to 670 Days)
Participant flow — Dose Escalation (up to 670 Days)
MilestonePart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BIDPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Started3437700000
Received at least 1 dose of study drug3437700000
Completed0000000000
Not completed3437700000
Withdrew: Adverse event0001000000
Withdrew: Clinical progression1001000000
Withdrew: Death1235400000
Withdrew: Progressive disease (per recist)0200200000
Withdrew: Withdrawal by subject1000100000
Dose Extension Part 2b (up to 868 Days)
Participant flow — Dose Extension Part 2b (up to 868 Days)
MilestonePart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BIDPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Started0000048000
Received at least 1 dose of study drug0000048000
Completed0000000000
Not completed0000048000
Withdrew: Death0000020000
Withdrew: Progressive disease (per recist)0000005000
Withdrew: Withdrawal by subject0000013000
Withdrew: Other than specified0000010000
Dose Extension Part 2e (up to 868 Days)
Participant flow — Dose Extension Part 2e (up to 868 Days)
MilestonePart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BIDPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Started00000003510
Received at least 1 dose of study drug00000003510
Completed0000000000
Not completed00000003510
Withdrew: Death0000000124
Withdrew: Progressive disease (per recist)0000000021
Withdrew: Withdrawal by subject0000000002
Withdrew: Clinical progression0000000010
Withdrew: Other than specified0000000203

Outcome measures

PrimaryPart 1: Recommended Phase 2 Dose (RP2D) of CGT9486

RP2D was determined by incidence of dose limiting toxicity (DLT) using Common Terminology Criteria for Adverse Events (CTCAE) V4.03. DLTs: AEs that occurred during Cycle 1, possibly/probably related to study drug, and met 1 of the following criteria: Hematologic Toxicities: Grade 4 neutropenia for \>7 days, Grade ≥3 neutropenia with fever, Grade 4 thrombocytopenia, Grade ≥3 thrombocytopenia for \>7 days, Grade 4 anemia; Other Toxicities: Any Grade ≥3 (AE or laboratory) toxicity despite adequate supportive care except for following: Grade ≥3 nausea, vomiting, or diarrhea that resolved to Grade ≤2 within 72 hours; Grade 3 fatigue that resolved to Grade ≤2 within 14 days; Grade ≥3 asymptomatic changes in alkaline phosphatase, hypomagnesemia, hyperglycemia, or hypophosphatemia; Grade 3 increases in transaminases for ≤5 days; Any other Grade ≥3 toxicity for which further dose escalation deemed inappropriate.

Time frame:
Cycle 1 of Part 1 (Cycle length = 28 days)
Reported as:
Number · mg
Part 1: Recommended Phase 2 Dose (RP2D) of CGT9486
mgPart 1: CGT9486 (Single-Agent)
Part 1: Recommended Phase 2 Dose (RP2D) of CGT94861000
PrimaryPart 1: Number of Participants With Treatment Emergent Adverse Events (TEAEs)

An adverse event (AE) was any untoward medical occurrence in a participant administered study drug, which did not necessarily have a causal relationship with the treatment. An AE could be any unfavorable and unintended sign (for example, including an abnormal laboratory finding), symptom, or disease temporally associated with the use of the study drug, whether or not it was considered to be study drug related. This included any newly occurring event or previous condition that had increased in severity or frequency since the administration of study drug. A treatment-emergent AE (TEAE) was an AE that started or worsened in severity on or after the date of the initial dose of study drug. A summary of serious and all other non-serious adverse events regardless of causality is located in the Reported Adverse Events module.

Time frame:
From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 670 days)
Reported as:
Count of participants · Participants
Part 1: Number of Participants With Treatment Emergent Adverse Events (TEAEs)
ParticipantsPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BID
Part 1: Number of Participants With Treatment Emergent Adverse Events (TEAEs)34377
PrimaryPart 1: Area Under The Concentration Time Curve From Time Zero to 24 Hours After Dosing (AUC0-24) of CGT9486

AUC0-24 was determined by the linear trapezoidal rule for the ascending portion and by the log trapezoidal rule for the descending portion of the plasma profile. For BID dosing, Cycle 1 Day 15 AUC0-24 was calculated as 2 x area under the concentration time curve from time zero to 12 hours after dosing (AUC0-12). Missing concentration data were excluded from Pharmacokinetic (PK) analysis.

Time frame:
Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15
Reported as:
Geometric mean · nanograms (ng)*hour/milliliter (mL)
Part 1: Area Under The Concentration Time Curve From Time Zero to 24 Hours After Dosing (AUC0-24) of CGT9486
nanograms (ng)*hour/milliliter (mL)Part 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BID
Cycle 1, Day 19240 ± 8.77200 ± 20.75980 ± 41.711000 ± 26.3NA ± NA
Cycle 1, Day 1518500 ± 43.721300 ± 27.715400 ± 65.822100 ± 5624800 ± 51.4
PrimaryPart 1: Maximum Observed Plasma Concentration (Cmax) of CGT9486

Cmax was taken directly from bioanalytical data.

Time frame:
Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15
Reported as:
Geometric mean · ng/mL
Part 1: Maximum Observed Plasma Concentration (Cmax) of CGT9486
ng/mLPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BID
Cycle 1, Day 1499 ± 6.92332 ± 17.9382 ± 6.48558 ± 28.1331 ± 22.8
Cycle 1, Day 15869 ± 38.41010 ± 27.5714 ± 64.91060 ± 591150 ± 52.4
PrimaryPart 1: Time to Reach Cmax (Tmax) of CGT9486

Tmax was taken directly from merged clinical and bioanalytical data, with time presented as nominal time relative to dose.

Time frame:
Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 (Day -10 for 350 mg QD cohort) and Cycle 1 Day 15
Reported as:
Median · hours
Part 1: Time to Reach Cmax (Tmax) of CGT9486
hoursPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1:CGT9486 500 mg BID
Cycle 1, Day 1 (or Day -10)9 (9 to 24)16.5 (9 to 24)15 (6 to 24)9 (3 to 24)7 (3 to 9)
Cycle 1, Day 153 (1 to 24)9 (0 to 9)7 (7 to 24)6 (3 to 24)5 (1 to 9)
PrimaryPart 1: Half Life (T1/2) of PLX9486

Participants in a selected Part 1 cohort (350 mg QD) participated in a PK substudy to obtain more complete information on the PK profile of PLX9486. Participants received a single dose of 350 mg of PLX9486 10 days prior to the start of repeated QD dosing and plasma concentrations were followed 0.5, 1, 2, 4, 6, and 9 hours postdose, and then once daily for 9 additional days prior to Cycle 1 Day 1.

Time frame:
Predose, 0.5, 1, 2, 4, 9, 24, 49, 72, 96, 120, 144, 168, 192, 216 hours postdose on Day -10
Reported as:
Mean · hours
Part 1: Half Life (T1/2) of PLX9486
hoursPart 1: CGT9486 350 mg
Part 1: Half Life (T1/2) of PLX948675.4 ± 26.1
PrimaryPart 2e: RP2D of CGT9486 in Combination With Sunitinib

RP2D was determined by incidence of DLT using CTCAE version 4.03 for severity grade. DLTs were defined as AEs that occurred during Cycle 1, classified as possibly/probably related to study drug, and met 1 of the following criteria: Hematologic Toxicities: Grade 4 neutropenia for \>7 days, Grade ≥3 neutropenia with fever, Grade 4 thrombocytopenia, Grade ≥3 thrombocytopenia for \>7 days or with bleeding, Grade 4 anemia; Other Toxicities: Any Grade ≥3 (AE or laboratory) toxicity despite adequate supportive care except for the following: Grade ≥3 nausea, vomiting, or diarrhea that resolved to Grade ≤2 within 72 hours; Grade 3 fatigue that resolved to Grade ≤2 within 14 days; Grade ≥3 asymptomatic changes in alkaline phosphatase, hypomagnesemia, hyperglycemia, or hypophosphatemia; Grade 3 increases in transaminases for ≤5 days; Any other Grade ≥3 toxicity for which further dose escalation deemed inappropriate.

Time frame:
Cycle 1 of Part 2e (Cycle length = 28 days)
Reported as:
Number · mg
Part 2e: RP2D of CGT9486 in Combination With Sunitinib
mgPart 2e: CGT9486 + Sunitinib
Part 2e: RP2D of CGT9486 in Combination With Sunitinib1000
PrimaryPart 2b: RP2D of PLX9486 in Combination With Pexidartinib

RP2D was determined by incidence of DLT using CTCAE version 4.03 for severity grade. DLTs were defined as AEs that occurred during Cycle 1, classified as possibly/probably related to study drug, and met 1 of the following criteria: Hematologic Toxicities: Grade 4 neutropenia for \>7 days, Grade ≥3 neutropenia with fever, Grade 4 thrombocytopenia, Grade ≥3 thrombocytopenia for \>7 days or with bleeding, Grade 4 anemia; Other Toxicities: Any Grade ≥3 (AE or laboratory) toxicity despite adequate supportive care except for the following: Grade ≥3 nausea, vomiting, or diarrhea that resolved to Grade ≤2 within 72 hours; Grade 3 fatigue that resolved to Grade ≤2 within 14 days; Grade ≥3 asymptomatic changes in alkaline phosphatase, hypomagnesemia, hyperglycemia, or hypophosphatemia; Grade 3 increases in transaminases for ≤5 days; Any other Grade ≥3 toxicity for which further dose escalation deemed inappropriate.

Time frame:
Cycle 1 of Part 2 b (Cycle length = 28 days)
Reported as:
Number · mg
Part 2b: RP2D of PLX9486 in Combination With Pexidartinib
mgPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)
Part 2b: RP2D of PLX9486 in Combination With PexidartinibNANA
PrimaryPart 2b: Number of Participants With Any TEAEs and Treatment-Related TEAEs

An AE was any untoward medical occurrence in a participant administered study drug, which did not necessarily have a causal relationship with the treatment. An AE could be any unfavorable and unintended sign (for example, including an abnormal laboratory finding), symptom, or disease temporally associated with the use of the study drug, whether or not it was considered to be study drug related. This included any newly occurring event or previous condition that had increased in severity or frequency since the administration of study drug. A TEAE was an AE that started or worsened in severity on or after the date of the initial dose of study drug. Treatment-related TEAEs included all events reported as "possibly related" or "probably related" to any of study treatment. A summary of serious and all other non-serious adverse events regardless of causality is located in the Reported Adverse Events module.

Time frame:
From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 868 days)
Reported as:
Count of participants · Participants
Part 2b: Number of Participants With Any TEAEs and Treatment-Related TEAEs
ParticipantsPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)
TEAEs48
Related TEAEs47
PrimaryPart 2e: Number of Participants With Any TEAEs and Treatment-Related TEAEs

An AE was any untoward medical occurrence in a participant administered study drug, which did not necessarily have a causal relationship with the treatment. An AE could be any unfavorable and unintended sign (for example, including an abnormal laboratory finding), symptom, or disease temporally associated with the use of the study drug, whether or not it was considered to be study drug related. This included any newly occurring event or previous condition that had increased in severity or frequency since the administration of study drug. A TEAE was an AE that started or worsened in severity on or after the date of the initial dose of study drug. Treatment-related TEAEs included all events reported as "possibly related" or "probably related" to any of study treatment. A summary of serious and all other non-serious adverse events regardless of causality is located in the Reported Adverse Events module.

Time frame:
From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 825 days)
Reported as:
Count of participants · Participants
Part 2e: Number of Participants With Any TEAEs and Treatment-Related TEAEs
ParticipantsPart 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
TEAEs3510
Related TEAEs359
SecondaryPart 1: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.1

ORR was defined as the percentage of participants who achieved a best overall response of confirmed complete response (CR) or partial response (PR). CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (whether target or non-target) must had reduction in short axis to \<10 millimeters (mm). PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters.

Time frame:
From the date of first dose of study drug until the first appearance of CR or PR (maximum exposure: 670 days)
Reported as:
Number · percentage of participants
Part 1: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.1
percentage of participantsPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BID
Part 1: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.10 (0.0 to 70.8)0 (0.0 to 60.2)0 (0.0 to 70.8)14.3 (0.4 to 57.9)0 (0.0 to 45.9)
SecondaryPart 1: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1

PFS was defined as the number of days from the first day of treatment (Cycle 1 Day 1) to the date of the first documented disease progression or date of death, whichever occurred first. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study (this included the baseline sum if that was the smallest on study). The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

Time frame:
From the first date of treatment until the first documented disease progression or date of death (maximum exposure: 670 days)
Reported as:
Median · days
Part 1: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1
daysPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BID
Part 1: Progression-Free Survival (PFS), as Assessed Using RECIST V1.154 (28 to 56)53 (20 to 53)48 (47 to 221)144 (38 to 335)186 (20 to 669)
SecondaryPart 1: Duration of Response (DOR), as Assessed Using RECIST V1.1

DOR was defined as the number of days from the date of first response (PR or CR confirmed at least 28 days later) to the date of first documented disease progression/relapse or death, whichever occurred first. CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (target or non-target) must had reduction in short axis to \<10 mm. PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study. The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

Time frame:
From the date of first response (PR or CR) to the date of first documented disease progression/relapse or death, whichever occurred first (maximum exposure: 670 days)
Reported as:
Median · days
Part 1: Duration of Response (DOR), as Assessed Using RECIST V1.1
daysPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BID
Part 1: Duration of Response (DOR), as Assessed Using RECIST V1.1———224—
SecondaryPart 2: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.1

ORR was defined as the percentage of participants who achieved a best overall response of confirmed CR or PR. CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (whether target or non-target) must had reduction in short axis to \<10 mm. PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters.

Time frame:
From the date of first dose of study drug until the first appearance of CR or PR (maximum exposure: 868 days)
Reported as:
Number · percentage of participants
Part 2: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.1
percentage of participantsPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: Overall Response Rate (ORR): Percentage of Participants With Best Overall Response of Complete Response (CR) or Partial Response (PR), as Assessed Using RECIST V1.133.3 (0.8 to 90.6)0 (0.0 to 36.9)33.3 (0.8 to 90.6)0 (0.0 to 52.2)28.6 (3.7 to 71.0)
SecondaryPart 2: Clinical Benefit Rate (CBR): Percentage of Participants With Clinical Benefit, as Assessed Using RECIST V1.1

Participants were considered to experience clinical benefit if they had a best overall response of stable disease (SD) that lasted for at least 16 weeks, or confirmed best overall response of PR or CR. SD: Neither sufficient shrinkage to qualify for PR nor sufficient increase to qualify for progressive disease (PD), taking as reference the smallest sum diameters. CR: Disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (target or non-target) must had reduction in short axis to \<10 mm. PR: At least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters. PD: At least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study. The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression.

Time frame:
From the date of first dose of study drug until the first appearance of CR, PR, or SD (maximum exposure: 868 days)
Reported as:
Number · percentage of participants
Part 2: Clinical Benefit Rate (CBR): Percentage of Participants With Clinical Benefit, as Assessed Using RECIST V1.1
percentage of participantsPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: Clinical Benefit Rate (CBR): Percentage of Participants With Clinical Benefit, as Assessed Using RECIST V1.1100 (29.2 to 100)37.5 (8.5 to 75.5)100 (29.2 to 100)60.0 (14.7 to 94.7)85.7 (42.1 to 99.6)
SecondaryPart 2: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1

PFS was defined as the number of days from the first day of treatment (Cycle 1 Day 1) to the date of the first documented disease progression or date of death, whichever occurred first. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study (this included the baseline sum if that was the smallest on study). The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

Time frame:
From the first date of treatment until the first documented disease progression or date of death (maximum exposure: 868 days)
Reported as:
Median · days
Part 2: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1
daysPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: Progression-Free Survival (PFS), as Assessed Using RECIST V1.1333 (234 to 336)128 (26 to 867)NA (503 to NA)319 (26 to 530)NA (41 to NA)
SecondaryPart 2: Overall Survival

Overall Survival was defined as the number of days from the first day of treatment (Cycle 1 Day 1) until the date of death. If a participant was lost to follow-up, overall survival was censored at the date of last contact. Median was calculated using Kaplan-Meier estimate.

Time frame:
From the first day of treatment until the date of death (maximum exposure: 868 days)
Reported as:
Median · days
Part 2: Overall Survival
daysPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e:CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: Overall Survival853 (240 to 853)414 (106 to NA)NA (551 to NA)362 (164 to NA)NA (98 to NA)
SecondaryPart 2: Overall Survival at Month 12

Percentage of participants who survived at Month 12 have been reported.

Time frame:
Month 12
Reported as:
Number · percentage of participants
Part 2: Overall Survival at Month 12
percentage of participantsPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: Overall Survival at Month 1266.7 (5.4 to 94.5)55.6 (7.3 to 87.6)100 (100 to 100)40.0 (5.2 to 75.3)68.6 (21.3 to 91.2)
SecondaryPart 2: PFS at Month 6

PFS was defined as the number of days from the first day of treatment (Cycle 1 Day 1) to the date of the first documented disease progression or date of death, whichever occurred first. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study (this included the baseline sum if that was the smallest on study). The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Percentage of participants with PFS at Month 6 are reported.

Time frame:
Month 6
Reported as:
Number · percentage of participants
Part 2: PFS at Month 6
percentage of participantsPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: PFS at Month 6100 (100 to 100)25.0 (1.4 to 63.5)100 (100 to 100)60.0 (12.6 to 88.2)85.7 (33.4 to 97.9)
SecondaryPart 2: Duration of Response (DOR), as Assessed Using RECIST V1.1

DOR was defined as the number of days from the date of first response (PR or CR confirmed at least 28 days later) to the date of first documented disease progression/relapse or death, whichever occurred first. CR was defined as disappearance of all target and non-target lesions and normalization of tumor marker level. Any pathological lymph nodes (target or non-target) must had reduction in short axis to \<10 mm. PR was defined as at least a 30% decrease in the sum of diameters of target lesions, taking as reference the baseline sum diameters. Disease progression was defined as at least a 20% increase in the sum of diameters of target lesions, taking as reference the smallest sum on study. The sum must also demonstrate an absolute increase of at least 5 mm. Unequivocal progression of existing non-target lesions. The appearance of one or more new lesions was also considered progression. Median was calculated using Kaplan-Meier estimate.

Time frame:
From the date of first response (PR or CR) to the date of first documented disease progression/relapse or death, whichever occurred first (maximum exposure: 868 days)
Reported as:
Median · days
Part 2: Duration of Response (DOR), as Assessed Using RECIST V1.1
daysPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Part 2: Duration of Response (DOR), as Assessed Using RECIST V1.1169—NA (NA to NA)—NA (NA to NA)
SecondaryPart 2: AUC0-24 of CGT9486 in Combination With Pexidartinib or Sunitinib

AUC0-24 was determined by the linear trapezoidal rule for the ascending portion and by the log trapezoidal rule for the descending portion of the plasma profile. Missing concentration data were excluded from PK analysis.

Time frame:
Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15
Reported as:
Geometric mean · ng*hour/mL
Part 2: AUC0-24 of CGT9486 in Combination With Pexidartinib or Sunitinib
ng*hour/mLPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Cycle 1, Day 17810 ± 31.67910 ± 21.99800 ± 69.414800 ± 16.312700 ± 28.5
Cycle 1, Day 1520300 ± 53.219100 ± 32.526500 ± 61.341400 ± 28.938300 ± 43.3
SecondaryPart 2: Cmax of CGT9486 in Combination With Pexidartinib or Sunitinib

Cmax was taken directly from bioanalytical data.

Time frame:
Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15
Reported as:
Geometric mean · ng/mL
Part 2: Cmax of CGT9486 in Combination With Pexidartinib or Sunitinib
ng/mLPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Cycle 1, Day 1384 ± 34.4412 ± 26.8512 ± 69.2866 ± 10.9681 ± 28.1
Cycle 1, Day 15991 ± 53.9924 ± 30.71200 ± 612040 ± 13.71850 ± 42.5
SecondaryPart 2: Tmax of CGT9486 in Combination With Pexidartinib or Sunitinib

Tmax was taken directly from merged clinical and bioanalytical data, with time presented as nominal time relative to dose.

Time frame:
Predose, 1, 3, 5, 7, 9, and 24 hours postdose at Cycle 1 Day 1 and Cycle 1 Day 15
Reported as:
Median · hours
Part 2: Tmax of CGT9486 in Combination With Pexidartinib or Sunitinib
hoursPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Cycle 1, Day 18 (3 to 24)9 (5 to 24)9 (7 to 9)24 (7 to 24)9 (7 to 24)
Cycle 2, Day 155 (5 to 9)6 (3 to 9)3 (0 to 9)9 (3 to 24)3 (0 to 24)

Adverse events

Collected over From the date of first dose of study drug up to 30 days after last dose of study drug (maximum exposure: 670 days for Part 1; 868 days for Part 2b; 825 days for Part 2e). Non-serious events are listed at a 0% frequency threshold.

Adverse event summary by group
GroupDeathsSeriousOther
Part 1: CGT9486 250 mg QD1/3 (33.3%)0/3 (0%)3/3 (100%)
Part 1: CGT9486 350 mg QD3/4 (75%)2/4 (50%)4/4 (100%)
Part 1: CGT9486 500 mg QD3/3 (100%)1/3 (33.3%)3/3 (100%)
Part 1: CGT9486 1000 mg QD5/7 (71.4%)1/7 (14.3%)7/7 (100%)
Part 1: CGT9486 500 mg BID4/7 (57.1%)3/7 (42.9%)7/7 (100%)
Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)2/4 (50%)2/4 (50%)4/4 (100%)
Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)0/8 (0%)0/8 (0%)8/8 (100%)
Part 2e: CGT9486 500 mg QD + Sunitinib 25 mg1/3 (33.3%)1/3 (33.3%)3/3 (100%)
Part 2e: CGT9486 1000 mg QD + Sunitinib 25 mg1/5 (20%)1/5 (20%)5/5 (100%)
Part 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg4/10 (40%)4/10 (40%)10/10 (100%)
Most frequent serious events
Showing 10 of 17
Most frequent serious events
EventPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BIDPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
Procedural vomitingInjury, poisoning and procedural complications0/30/41/30/70/70/40/80/30/50/10
Prophylaxis against dehydrationSurgical and medical procedures0/30/41/30/70/70/40/80/30/50/10
AnaemiaBlood and lymphatic system disorders0/30/40/30/71/71/40/81/30/50/10
Small intestinal obstructionGastrointestinal disorders0/31/40/30/70/71/40/80/31/50/10
Haemorrhoidal haemorrhageGastrointestinal disorders0/31/40/30/70/70/40/80/30/50/10
Gastrointestinal haemorrhageGastrointestinal disorders0/31/40/30/70/70/40/80/30/51/10
AsthmaRespiratory, thoracic and mediastinal disorders0/30/40/30/70/71/40/80/30/50/10
MelaenaGastrointestinal disorders0/30/40/30/70/71/40/80/30/50/10
Abdominal abscessInfections and infestations0/30/40/30/70/70/40/80/31/50/10
HyperuricaemiaMetabolism and nutrition disorders0/30/40/31/70/70/40/80/30/50/10
Most frequent other events
Showing 10 of 230
Most frequent other events
EventPart 1: CGT9486 250 mg QDPart 1: CGT9486 350 mg QDPart 1: CGT9486 500 mg QDPart 1: CGT9486 1000 mg QDPart 1: CGT9486 500 mg BIDPart 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Fasting)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mg (Non-Fasting)Part 2e: CGT9486 500 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 25 mgPart 2e: CGT9486 1000 mg QD + Sunitinib 37.5 mg
DiarrhoeaGastrointestinal disorders2/31/41/32/74/71/43/83/32/58/10
NauseaGastrointestinal disorders2/31/42/33/71/70/43/83/32/55/10
Decreased appetiteMetabolism and nutrition disorders0/31/40/32/72/72/42/83/32/52/10
FatigueGeneral disorders0/34/40/34/74/71/44/81/32/54/10
HeadacheNervous system disorders1/30/40/31/71/70/41/83/31/51/10
HypertensionVascular disorders0/30/40/32/71/73/41/80/33/54/10
Aspartate aminotransferase increasedInvestigations0/32/42/33/74/71/44/82/31/57/10
VomitingGastrointestinal disorders1/31/41/31/72/71/41/82/32/54/10
Abdominal painGastrointestinal disorders2/30/41/31/71/71/41/81/30/53/10
ConstipationGastrointestinal disorders1/30/40/30/72/71/41/82/33/50/10

Baseline characteristics

Safety population included all participants treated with at least 1 dose of any study drug. Per planned analysis, baseline characteristics data were collected and reported per study part (not per dose group).

Age, Continuous
Age, Continuous(years)Part 1: CGT9486 (Single-Agent)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mgPart 2e: CGT9486 + SunitinibTotal
Mean58.0 ± 11.9164.4 ± 10.4360.1 ± 9.4160.1 ± 10.98
Sex: Female, Male
Sex: Female, Male(Participants)Part 1: CGT9486 (Single-Agent)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mgPart 2e: CGT9486 + SunitinibTotal
Female93820
Male159731
Ethnicity (NIH/OMB)
Ethnicity (NIH/OMB)(Participants)Part 1: CGT9486 (Single-Agent)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mgPart 2e: CGT9486 + SunitinibTotal
Hispanic or Latino1113
Not Hispanic or Latino23111448
Unknown or Not Reported0000
Race (NIH/OMB)
Race (NIH/OMB)(Participants)Part 1: CGT9486 (Single-Agent)Part 2b: CGT9486 500 mg QD + Pexidartinib 600 mgPart 2e: CGT9486 + SunitinibTotal
American Indian or Alaska Native0000
Asian2024
Native Hawaiian or Other Pacific Islander0000
Black or African American1315
White2191242
More than one race0000
Unknown or Not Reported0000
08

Study locations

6 sites
  • Sylvester Comprehensive Cancer Center/ UMHC
    Miami, Florida 33136, United States
  • Dana-Farber Cancer Institute
    Boston, Massachusetts 02115, United States
  • University of Michigan Comprehensive Cancer Center
    Ann Arbor, Michigan 48109, United States
  • Karmanos Cancer Institute
    Detroit, Michigan 48201, United States
  • Memorial Sloan Kettering Cancer Center
    New York, New York 10065, United States
  • OSU Comprehensive Cancer Center
    Columbus, Ohio 43210, United States
09

References and documents

Publications

  • Wagner AJ, Severson PL, Shields AF, Patnaik A, Chugh R, Tinoco G, Wu G, Nespi M, Lin J, Zhang Y, Ewing T, Habets G, Burton EA, Matusow B, Tsai J, Tsang G, Shellooe R, Carias H, Chan K, Rezaei H, Sanftner L, Marimuthu A, Spevak W, Ibrahim PN, Inokuchi K, Alcantar O, Michelson G, Tsiatis AC, Zhang C, Bollag G, Trent JC, Tap WD. Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial. JAMA Oncol. 2021 Sep 1;7(9):1343-1350. doi: 10.1001/jamaoncol.2021.2086. PubMed 34236401 ↗

Study documents

  • Study protocol · Jul 23, 2019
  • Statistical analysis plan · Jul 1, 2020

Documents are hosted by the registry — open the source record to download them.

10

Updates

Tracking since Sep 25, 2026
No changes since tracking began. The registry record was last updated on Feb 14, 2025, before this site started recording changes on Sep 25, 2026. Its history is on ClinicalTrials.gov ↗
11

Registry details

Key details

Study ID
NCT02401815
Lead sponsor
Cogent Biosciences, Inc.
Collaborators
Plexxikon
Responsible party
Sponsor
First posted
Mar 30, 2015
Start date
Mar 6, 2015
Primary completion
May 11, 2020
Completion
May 11, 2020
Results posted
Feb 14, 2025
Last update
Feb 14, 2025

Study contacts

Jessica Sachs, MD
study director · Cogent Biosciences, Inc.

Oversight

Data monitoring committee
No
FDA-regulated drug
Yes
FDA-regulated device
No
View the source record on ClinicalTrials.gov ↗

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Studies of the drugs tested here: Pexidartinib · Sunitinib

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